| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0230 |
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| Symbol | rplA |
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| ID | 4076263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 244356 |
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| End bp | 245054 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638005524 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_612225 |
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| Protein GI | 99080071 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.365606 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAGC TCGGTAAACG TACCCGCGCA GCGCGCGAAG CCTTCGCAGG CAAATCGAAC
CTCACCATCG AGGAAGCCGT CGCACTGGTG AAGGCAAACG CCACCACCAA ATTTGACGAA
ACCGTCGAAA TCGCGATGAA CCTCGGTGTT GACACCCGTC ACGCAGACCA GATGGTCCGC
GGCGTTGTTG GCCTGCCCAA CGGCACCGGC AAAACCATGC GTGTTGCCGT GTTCGCACGT
GGCCCCAAGG CTGACGAAGC CAAGGAAGCT GGCGCAGACA TCGTTGGCGC AGAAGACCTG
ATGGAAACCA TCCAGGGCGG CACCATCGAT TTCGATCGCT GCATTGCAAC CCCGGACATG
ATGCCCGTCG TTGGTCGTCT GGGTAAGGTC CTTGGCCCGC GCAACCTGAT GCCGAACCCC
AAAGTTGGCA CCGTGACCAT GGACGTGAAA GCGGCCGTGG AAGCAGCCAA AGGCGGCGAA
GTTCAGTTCA AAGCGGAAAA AGGCGGCGTT GTGCACGCTG GCGTTGGCAA AGCGTCCTTC
GACGAAGCCA AGCTGGTTGA AAACGTGCGT GCCTTTGTGT CCGCAGTGGC CAAAGCCAAG
CCCTCCGGCG CCAAAGGTGC CTACATGAAG AAAATCGTCC TGTCCTCCAC CATGGGCCCG
GGCGTCACTC TTGACGTGGA CGGTGCGGTC TCCGAGTAA
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| Protein sequence | MAKLGKRTRA AREAFAGKSN LTIEEAVALV KANATTKFDE TVEIAMNLGV DTRHADQMVR
GVVGLPNGTG KTMRVAVFAR GPKADEAKEA GADIVGAEDL METIQGGTID FDRCIATPDM
MPVVGRLGKV LGPRNLMPNP KVGTVTMDVK AAVEAAKGGE VQFKAEKGGV VHAGVGKASF
DEAKLVENVR AFVSAVAKAK PSGAKGAYMK KIVLSSTMGP GVTLDVDGAV SE
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