Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0218 |
Symbol | |
ID | 4076251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 233213 |
End bp | 234322 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638005512 |
Product | major facilitator transporter |
Protein accession | YP_612213 |
Protein GI | 99080059 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0738] Fucose permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.851402 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGTTCT GTGTCGGGGC CTTTGCGGCC TATGTGCCCC AACTGAAAAG TCAGGCGGGG CTGAGTGATG CCGAATTTGG CCTTGCCCTG TTGATCGGTG CCGCCGGAGC CGTGGGCGCG ATGTGGCTCG CGCCGCGCGT GGATCGCCTG CTGGGACATG CGGCGATGAC CATCTGCGCG CTCTTGCTGG CGACGGCCTT TCTGCTGCCG GGCCTTGCGC AGAGCTGGGC CGGTTTTGCC GCGGCGATGT TTCTGGCCTC CGGGGCGGGA GGGCTTCTGG ATGTGGTGAT GAATGCACGT CTGTCCGGGC TCGAGGCACG TTCTGGCCGC TCCTTGATGA ACCTCAACCA TGGTCTGTTT TCGCTTGCCT ACGCCCTGGC TGCCCTGGTC GCCGGGCTCG TTCGCGAAGC AGGTGTGCCG CCCGTCTGGT GTTTTGCGGG CATCCTTTTG GTGTCGGGCC TGTTGGCATT GGGAATGCGG GATGAGGTGC CGCCTGCGCC CGCCGAAGAT CCGCAAGGGA ACGCGTCGCT GCCTCTGCCT GGGGCAATGA TTGTGATTGC CGGGCTGATC GTGCTCATTG CCTTTACGGC TGAGCAGGCA ACGGAACATT GGTCTGCACT GCATCTGGAG CGCGCCTTTG GCGCGAATGC GGCGGAAGGG GCTTTGGGGC CTGCGATTCT CGGTTTCACG ATGGGTATCG GGCGTCTCTC CGGACAGGAG CTGGTGCGCC GCGTGGCCGA GGGCAGGCTC ATGCAGATCG CCGCGGCGCT CGCGGCATCG GGGTTGATCC TTGCGGCGTT TGCCCCCGTG CAGGCTCTGG CCTACGCGGG CTTTGCGATC CTTGGATTGG GCGTTTCTAC AGTCGGGCCG ACGGCGCTCG CCTGGGTGGG CAAAACAATC CCATCGCGCC TGCGCGCGGC GGCCATTTCG CGGCTGGTGA TGATTGGCTA TTGCGGGTTC TTTGTGGGGC CGCCAGTGAT CGGCTTTATT GCAGAGGTAT TTGGTCTGCG GCTGGCATTG GCCCTGATGG GGGCAATGCT GCTCTGTATC ACGGTACTTT TGGTGCCCGC CCTGCGCGCC AGTGCGCGGA AATCCGAGCT GATTGCCTGA
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Protein sequence | MGFCVGAFAA YVPQLKSQAG LSDAEFGLAL LIGAAGAVGA MWLAPRVDRL LGHAAMTICA LLLATAFLLP GLAQSWAGFA AAMFLASGAG GLLDVVMNAR LSGLEARSGR SLMNLNHGLF SLAYALAALV AGLVREAGVP PVWCFAGILL VSGLLALGMR DEVPPAPAED PQGNASLPLP GAMIVIAGLI VLIAFTAEQA TEHWSALHLE RAFGANAAEG ALGPAILGFT MGIGRLSGQE LVRRVAEGRL MQIAAALAAS GLILAAFAPV QALAYAGFAI LGLGVSTVGP TALAWVGKTI PSRLRAAAIS RLVMIGYCGF FVGPPVIGFI AEVFGLRLAL ALMGAMLLCI TVLLVPALRA SARKSELIA
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