| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0216 |
|---|
| Symbol | |
|---|
| ID | 4078664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 231708 |
|---|
| End bp | 232337 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638005510 |
|---|
| Product | 50S ribosomal protein L25/general stress protein Ctc |
|---|
| Protein accession | YP_612211 |
|---|
| Protein GI | 99080057 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1825] Ribosomal protein L25 (general stress protein Ctc) |
|---|
| TIGRFAM ID | [TIGR00731] ribosomal protein L25, Ctc-form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.925781 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAATG AGATTCCTGA TCTCGAGTGC CAGGTACGCG CGGGGACGGG CAAGGGCGCC
GCTCGCGCAG CACGTCGTGC GAACCTGGTT CCTGGTGTTG TATTTGGCGG CGACGCAGAC
CCGCTGGCAA TCCAGATCCC CTACAACGTC CTGCTGAAGC GCCTGAAAGC TGGCCGCTTT
AAGTCGACCC TTTTCAACCT CAAGGTTGAA GGCCACGACG ACGTGCGTGT GATCTGCCGC
GACGTTCAGC GTGACGTTGT CAAAGACCTG CCCACCCACT TCGACCTGAT GCGCCTGCGC
CGCACCTCGA AAATCAACCT CTTCATCCCC GTTGAGTTCA TCAACGAAGA AGAGTGCGTT
GGTCTGAAGC GTGGCGGTGT TCTCACCGTT GTGCGCGCCG AAGTCGAACT GGTTGTGACC
GCGGGTGACA TCCCCGAGAA GCTGACCGTT GACCTGACTG GCAAAGCCAT CGGCGACGTG
ATCCACATCT CTGACGTGAC CCTGCCCGAA GGCAGCAAGC CGACGATCGA TCGTGACTTC
GTCATCGCAA ACATCTCTGC ACCGTCCGGG CTCAAGTCCG CTGACGATGA AGCAGAAGGT
GAAGACGCCG AAGAAGCGGC AGCTGAATAA
|
|---|
| Protein sequence | MANEIPDLEC QVRAGTGKGA ARAARRANLV PGVVFGGDAD PLAIQIPYNV LLKRLKAGRF
KSTLFNLKVE GHDDVRVICR DVQRDVVKDL PTHFDLMRLR RTSKINLFIP VEFINEEECV
GLKRGGVLTV VRAEVELVVT AGDIPEKLTV DLTGKAIGDV IHISDVTLPE GSKPTIDRDF
VIANISAPSG LKSADDEAEG EDAEEAAAE
|
|---|
| |