| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0200 |
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| Symbol | rpsA |
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| ID | 4078648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 218325 |
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| End bp | 220001 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005494 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_612195 |
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| Protein GI | 99080041 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.977671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAAA CAACATCGAT GGAGGAATTC GAAGCCCTCC TGCAAGAAAG CTTCGAAATG
GACACCCCCG AAGAGGGTTC CGTTGTCAAA GGCAAGATCA TTGCCATTGA GGCCGGTCAG
GCCATCATCG ACGTCGGCTA CAAGATGGAA GGTCGCGTCG AACTCAAAGA ATTCGCAAAC
CCCGGCGAAG CTCCTGAAGT TTCCGTTGGT GACGAGGTAG AAGTCTACCT GCGCGCCGCT
GAAAACGCCC GTGGCGAAGC TGTTATCTCC CGCGAGATGG CACGCCGCGA AGAAGCATGG
GACCGCCTGG AAAAAGCATA CGCAGACGAC CAGCGCGTCG AAGGTGCAAT CTTCGGTCGC
GTCAAAGGTG GCTTCACCGT CGATCTCGGC GGCGCCGTGG CCTTCCTGCC CGGCTCGCAA
GTTGACGTGC GCCCCGTGCG CGACGCAGGC CCGCTGATGG GTCTGAAGCA GCCGTTCCAG
ATCCTGAAAA TGGACCGTCG TCGTGGCAAC ATCGTTGTCT CCCGTCGTGC GATCCTCGAA
GAGTCCCGCG CCGAGCAGCG TGCCGAAGTC ATCGGCAACC TGTCCGAAGG CCAGGCGGTC
GACGGTGTGG TCAAGAACAT CACCGAATAC GGTGCGTTTG TTGACCTAGG CGGTGTTGAC
GGCTTGCTGC ACGTCACCGA CATGGCATGG CGCCGTGTGA ACCACCCCTC CGAGATCCTG
TCCATTGGCG AGACCGTCAA GGTTCAGGTC ATCAAGATCA ACAAAGAGAC TCACCGTATC
TCCCTCGGCA TGAAGCAGCT GCAGGAAGAT CCGTGGGATC TGGTTGGCGC CAAGTACCCG
CTGGAATCCG TTCACAAGGG TCGCGTCACC AACATCACCG ATTACGGTGC ATTTGTTGAG
CTGGAGCCCG GTGTCGAAGG TCTGGTCCAC GTCTCCGAGA TGTCCTGGAC CAAGAAAAAC
GTGCACCCCG GCAAGATCGT TTCCACCTCG CAGGAAGTGG ACGTCATGGT TCTGGAAATC
GACGGCGCCA AGCGTCGCGT GTCCCTGGGC CTCAAGCAGA CCATGCGTAA CCCGTGGGAA
GTGTTTGCAG AAACACACCC CGAGGGCACT CAGGTCGAAG GCGAAGTCAA GAACATCACC
GAATTCGGTC TGTTCATCGG CCTCGACGGC GACATCGACG GCATGGTTCA CCTCTCCGAC
CTCAGCTGGG ACGAGCGTGG CGAAGATGCG ATCCAGAACT ACCGCAAAGG CGACATGGTT
TCGGCCGTTG TCTCCGAAGT GGACGTTGAA AAAGAGCGTA TCTCCCTGTC GATCAAAGCC
CTGGGCGGTG ACAAGTTCGC AGACGCCGTT GGCGGCGTGA AGCGTGGCTC CATCGTGACC
GTGGAAGTGA CCGCGATCGA AGATGGTGGC ATCGAAGTGG AATATGAAGG CATGAAGTCC
TTTATCCGCC GCTCCGACCT CAGCCGTGAC CGTGCCGAGC AGCGCCCCGA GCGTTTCTCT
GTCGGTGACA AGGTCGACGT CCGCGTCACC AACATCGACT CCAAGACTCG TCGTCTGGGC
CTGTCGATCA AGGCACGCGA GATCGCAGAA GAGAAAGAAG CCGTCGAACA GTATGGTTCT
TCCGACTCCG GCGCGTCTCT TGGCGACATC CTGGGCGCAG CGCTCAAGAG CGAGTAA
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| Protein sequence | MAQTTSMEEF EALLQESFEM DTPEEGSVVK GKIIAIEAGQ AIIDVGYKME GRVELKEFAN
PGEAPEVSVG DEVEVYLRAA ENARGEAVIS REMARREEAW DRLEKAYADD QRVEGAIFGR
VKGGFTVDLG GAVAFLPGSQ VDVRPVRDAG PLMGLKQPFQ ILKMDRRRGN IVVSRRAILE
ESRAEQRAEV IGNLSEGQAV DGVVKNITEY GAFVDLGGVD GLLHVTDMAW RRVNHPSEIL
SIGETVKVQV IKINKETHRI SLGMKQLQED PWDLVGAKYP LESVHKGRVT NITDYGAFVE
LEPGVEGLVH VSEMSWTKKN VHPGKIVSTS QEVDVMVLEI DGAKRRVSLG LKQTMRNPWE
VFAETHPEGT QVEGEVKNIT EFGLFIGLDG DIDGMVHLSD LSWDERGEDA IQNYRKGDMV
SAVVSEVDVE KERISLSIKA LGGDKFADAV GGVKRGSIVT VEVTAIEDGG IEVEYEGMKS
FIRRSDLSRD RAEQRPERFS VGDKVDVRVT NIDSKTRRLG LSIKAREIAE EKEAVEQYGS
SDSGASLGDI LGAALKSE
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