| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0175 |
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| Symbol | |
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| ID | 4078783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 192594 |
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| End bp | 195974 |
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| Gene Length | 3381 bp |
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| Protein Length | 1126 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638005469 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_612170 |
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| Protein GI | 99080016 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCCCA ACCGAACCCA CCGCCCGGTC GAGACCTTCA GCACCGCGCG CCTGAGCCCC
CCGCACGCGG GGCCCGGTTA TGCCGAGCTC TGCGTGACCA GCAACTTCAC CTTTCTGACC
GGGGCTTCTC ATCCCGAGGA ACTGGTGACA CGCGCCGCGG AACTCGGGCT TGCCGCTATC
GCCATAACGG ATCGCAACTC ATTGGCCGGG GTGGTGCGCG CCTGGAGCGC CCTGAAAGAG
CTGCGGCGTG AGGCAGAGGC GGGTATCCAG ATCCGCTCGC ACCAGCGCGT TGATCCCTCT
TCGCGCCAGA AGATCGACAC CTCCGCGCCG CTTGAGCCGC CTGCGGCCCC GACCCTGCCC
AAGCTGATTG TCGGCTGCCG TCTGGTGCTG CGCGACAGCC AGACCGACTG GATTGCCCTG
CCTCGCGATC GGGCTGCTTA CGCGCGCCTG ACCCGCCTTT TGACGCTTGG CAAACGACGC
GCGCCCAAGG GCGAATGTCA TCTGGACGCC AGAGATCTGA TGGCGGCCTG CCGGGGCATG
AGTCTGATTG CGCTGCCACA ATCGGATCTG AAAACCGCCA TTCCCGAAAT CCGCCGGATG
CAGCAATGTT TTCCGCATTA TGTGTTTCTA GGCGCAGCGC CCCGGTACGA TGGCAGCGAT
CAGGCCTATC TGGCGGCCTG CGCTCATGCC GCGCAGATCA CAAGCGCACC AATGGTGGCG
GTCGGGGATG TGCTGATGCA CCGCGCCAGC CGCAGACCGC TGGCGGATGT GCTGACCTGC
ATGCGCGAAC ATATCACCAT TGATGAAATC GGCAGCCGCG CCCTGCCGAA CTCTGAACGC
CGCCTCAAGG CGGGTGCAGA CATGGCCCGG CTCTTTCAGG CCCACCCCGC CGCCCTACGC
CGCACGCTGG AGATCGCGGA CAAATGCAGC TTCGATCTCG GTGAGCTGTC GTATGACTAC
CCGCATGAGA TCGTCGATGG TGAGACACCG CAGGCGCGGC TTGAGCGGCT GGCGGCAGAG
GGGCTCAGGA GGCGCTATCC CGACGGCCCC ACGCAAAAAG CCGTCGTCCT CATGGACAAG
GAACTGAAAC TCGTCGCGGA ACTGGGCTTT GCCGCCTATT TCCTGACCGT GCATGACATC
GTGCAATACG CCAAATCGCA GAACATCCTC TGCCAGGGGC GTGGCTCGGC AGCGAATTCG
ATCCTGTGTT ACCTGCTTGG CATCACCGAC GTCAGCCCCG ACATGATCAC CATGGTGTTT
GAACGCTTTG TCTCGCGATA CCGGGGCGAG CCGCCGGACA TCGACGTGGA TTTCGAGCAT
GAACGCCGCG AGGAGGTGAT CCAATGGATC TACCAGAAGT ACGGCCGCGA CCGGGCGGGG
CTTTGTGCCA CCGTGATCCA TTTCCGCTCG CGCGCCGCCA TCCGCGAGGT GGGCAAGGTC
ATGGGTCTCT CTCAGGACGT CACCGCAGGC CTGTCGGGCC AGATCTGGGG CATGAGCAAC
GGCGGCGTTG ATCTCAAACG CATCGAAGAG CTTGGCCTCG ACATTCAGGA CCGCCGCCTG
ATGCAGACCA TCCGGTTGAT CGGAGAGATC ATCGGCTTTC CCCGGCATCT GTCCCAGCAC
GTCGGCGGTT TTGTCATCAC CAAGGGCCGC CTGGATGAGC TGGCCCCGAT TGAAAACGCC
GCGATGGAAG ACCGCACCGT GATCGAGTGG GACAAGGACG ACATCGACGC GCTTGGCATC
CTGAAAGTCG ACGTGCTGTC GCTGGGCATG CTCACCTGCC TGCAAAAATC CTTTGCCCTG
CTCAAGGCGC ATGAGGGAGA GACCCTTTCT ATCGGCACCG TTCCTCAGGA GGATGCCAAG
ACCTATGCCA TGCTATGCCG CGCGGATGCG GTCGGGGTCT TTCAGGTGGA GAGCCGGGCA
CAGATGAACT TTCTGCCCCG CATGCAGCCG CGCGAGTTTT ATGATCTGGT GATCGAGGTG
GCGATCGTGC GCCCCGGCCC CATTCAGGGC GATATGGTCC AGCCCTATAT CCGCCGCCGC
AATGGCCTCG AGGAGCCCGA ACCCTTTGGC CCGGAGCTTG AACAGGTCAC CAAACGCACC
TTGGGCGTGC CTCTGTTTCA GGAACAGGCC ATGCAGATTG CCGTGGTCGG TGCGGGCTTC
ACCCCCGAAG AAGCCGACCA CCTGCGTCGT TCGCTGGCGT CCTTTCGGCG CATGGGCACC
ATTGGCACCT TTCGCGACAA GTTCATCAAC GGCATGCTCG ACAAAGGCTA CAGCCAGGAG
GTCGCCGCGC GCTGCTTTTC TCAGATCGAG GGCTTTGCCG ATTATGGCTT TCCCGAAAGT
CACGCAGCCG CCTTTGCCAT GCTGGCCTAT GTTTCGGCCT GGCTCAAATG CCACCATCCG
GCGGTCTTTG CCTGCGCGCT TTTGAACTCA CAGCCGATGG GGTTCTATGC CCCGGCCCAG
ATCGTACGCG ATGCGCGCGA ACACGGCGTC GAGATCCGGC CGATCTGCGT CAATGCGTCG
GATTGGGATA ACCAGCTGGA GCGTCGCCCG GATGGGGCGC TGGCCCTGCG ACTGGGGTTT
CGCCAAATCA AAGGGTTTCG CGAGGAGGAC GCAGGCTGGA TCACCGCCGC GCGCGGCAAT
GGCTATCCCG ACCCAGAATC GCTGTGGCTG CGCGCTGGCC TGCGCCCGGA TGTCCTGACC
CGGCTCGCCG AGGCGGATGC GTTTTCCGAC ATGGGGCTTA CACGCCGCGA CGCCCTGTGG
CAGGTCAAGG CAATCCGCAG CGCCAAGCCG TTGCCTCTGT TTGACGACCC GATTGATGGC
GAGAGCATTT CAGAGCCTGC CGTAGACCTG CCCGTCATGC ATCTGGGCGA AGAGGTCGTG
GAGGATTACA TCTCCACCCG GCTGACACTG CGCGCACATC CGATGGAATT GCTGCGCCCC
GCGCTGCCGG GCCTCACCCC GCATGCCGCG CTTCTGGACG CGCCATTGGG GCGGCACACG
GTCTGCGGGC TGGTGATCAC ACGCCAGCGC CCCGGCACGG CATCGGGTGT CATCTTTCTG
ACGCTGGAGG ATGAAACCGG GGTCAGCAAT GTGGTCGTCT GGCCCAAGAT TTATGAACAA
TATCGCCGCA TCGTCATGGG AGGGCGGCTG CTGCAGGTGC GCGGATATCT GCAACGCGAA
GGGATCGTCG TGCATCTGAT CGCCCAGGAG ATCACCGATA TGTCGCACCG GCTCTCCGAC
CTTGGGCACC CGCTGGACGA GGCCGTGGGG ATCACCCAAC CGCAGGCCGA TGACGCCCCC
CGCCCCAGAC AGGCCACCAC AAGCGCGCGC CATCCACGCG AACAGGCCAA GCGCCTGTTT
CCAAGCCGGG ATTTTCACTA G
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| Protein sequence | MEPNRTHRPV ETFSTARLSP PHAGPGYAEL CVTSNFTFLT GASHPEELVT RAAELGLAAI
AITDRNSLAG VVRAWSALKE LRREAEAGIQ IRSHQRVDPS SRQKIDTSAP LEPPAAPTLP
KLIVGCRLVL RDSQTDWIAL PRDRAAYARL TRLLTLGKRR APKGECHLDA RDLMAACRGM
SLIALPQSDL KTAIPEIRRM QQCFPHYVFL GAAPRYDGSD QAYLAACAHA AQITSAPMVA
VGDVLMHRAS RRPLADVLTC MREHITIDEI GSRALPNSER RLKAGADMAR LFQAHPAALR
RTLEIADKCS FDLGELSYDY PHEIVDGETP QARLERLAAE GLRRRYPDGP TQKAVVLMDK
ELKLVAELGF AAYFLTVHDI VQYAKSQNIL CQGRGSAANS ILCYLLGITD VSPDMITMVF
ERFVSRYRGE PPDIDVDFEH ERREEVIQWI YQKYGRDRAG LCATVIHFRS RAAIREVGKV
MGLSQDVTAG LSGQIWGMSN GGVDLKRIEE LGLDIQDRRL MQTIRLIGEI IGFPRHLSQH
VGGFVITKGR LDELAPIENA AMEDRTVIEW DKDDIDALGI LKVDVLSLGM LTCLQKSFAL
LKAHEGETLS IGTVPQEDAK TYAMLCRADA VGVFQVESRA QMNFLPRMQP REFYDLVIEV
AIVRPGPIQG DMVQPYIRRR NGLEEPEPFG PELEQVTKRT LGVPLFQEQA MQIAVVGAGF
TPEEADHLRR SLASFRRMGT IGTFRDKFIN GMLDKGYSQE VAARCFSQIE GFADYGFPES
HAAAFAMLAY VSAWLKCHHP AVFACALLNS QPMGFYAPAQ IVRDAREHGV EIRPICVNAS
DWDNQLERRP DGALALRLGF RQIKGFREED AGWITAARGN GYPDPESLWL RAGLRPDVLT
RLAEADAFSD MGLTRRDALW QVKAIRSAKP LPLFDDPIDG ESISEPAVDL PVMHLGEEVV
EDYISTRLTL RAHPMELLRP ALPGLTPHAA LLDAPLGRHT VCGLVITRQR PGTASGVIFL
TLEDETGVSN VVVWPKIYEQ YRRIVMGGRL LQVRGYLQRE GIVVHLIAQE ITDMSHRLSD
LGHPLDEAVG ITQPQADDAP RPRQATTSAR HPREQAKRLF PSRDFH
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