| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0172 |
|---|
| Symbol | |
|---|
| ID | 4078780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 189692 |
|---|
| End bp | 191749 |
|---|
| Gene Length | 2058 bp |
|---|
| Protein Length | 685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638005466 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_612167 |
|---|
| Protein GI | 99080013 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACCGCT TGCTGGATTG CATCACGCAA GAACATGATT ACGCGTTTGT CGCGGTTGCG
GCTCTGATCT GCGTGATCGG GTCGCTTTTG TCGGTTCATA TGTCCGGGCG GCTGACTGAA
TGGACCGGCA AGCGAAAGAT CGTGCAGCTC CCCCTGGCTG GCCTGGTGAC GGGCGCGACG
ATCTGGTCCA CGCATTTCAT TGCTATGACA GCCTATGACC CGGGGTATGA ACATGGCTAT
GAGCCTGTGT TGACGGCCAC ATCGCTCTTT GTGGGGGTGA TCGGCTCTTT TGCGGCGAAT
GCGAGTCTGG CCTTTGTACC CGGTCGCGGG GCGCCGGTGC TGGCGGGCGG CCTGTTTGGC
CTGACGGTAT CGGCCATGCA TTACACCGGA ATGCAGGCCT ATCTGGTGCC GGGTACGCTG
TATTGGAATA CCGGTGCGGT TGCGGCCTCG GTGCTTTTGG GCGTCGGGCT TGGCGCGTTG
AGCTATGTGC TGATGGCGCG CCCGATGCGG GGCATTGTGG GGCGACTGGG ACCGGCGCTG
GTAATGGTGT TGGCGATTTG CCTCATGCAT TTCACCGGCA TGAGCGCGAT TGAGGTCCTG
TTTGATGTCG CGGTGGATGT ACCGCCCAAG ACCATTTCCG ACAACGCCAT GGCCCTGCTG
GTTTTTGCGG TGACGGCAAT CATTTTGCTG ATCGCCATGG CCTCTGCGAG CATCGAGGTG
AACATGGAGG ATGATGCCCG CGATCAACTC AACCACGCCG CCACCCATGA CCCGCTGACA
GGCATGCCCA ACCGCATGTG GCTCACCCGG AAGCTCGACG CGCTGAAGAT CCGGCTCGAC
GAGAACGAGA CCAGGCGCTG CGCGATCATG ACCATCGATC TCAACCTCTT TAAGGAGGTG
AACGATGTGT ACGGACACAG TGCCGGCGAT GCCGTTCTGC GGTGTGTGGC GTTGCGGATG
ATGCAGCATG AGGGTGAGGG CGAATGTGTC ACGCGCGTAG GCGGGGACGA GTTTGTGGCG
ATCAAAGAGG GTTTTCGCCG GATGGAGGAG GTGCTGAGCT TTGCCGAGCG TCTCCACGCA
GCCATTGTCG AGCCGGTCGA CTTGGAGGAT GTCTCTCTGC GGGTGGGGGC TTCGATCGGG
ATTGCGACAA CCATGGATGA CGGCCGCGAC CCTGCGGATC TGCTCCACAA GTCGGATGTG
GCGATGTATC GCGCCAAGTC GGATCCAGAC ACGCCGATTT GTCGGTTCAA TGCGGAGATG
GACCGCCGCA GTCGTGAAAA GACCCAGATT GTGCATGACC TGCGTCTGGC GGTGGACAAC
GACGAGTTCG AGCTGGTGTA TCAGCTGCAA AATGCGCTCG ACACGATGGA GCCGGTTGGA
TTTGAGGTGC TGTTGCGCTG GAACCATCCA AAACGCGGGC GGGTGTCGCC GGATGTTTTT
ATTCCGATCG CCGAGGAAAC AGGCCTGATT CGAGACATCG GTCATTGGGT CTTGCGCGAA
GCCTGCCGAG AAGCCTCACT CTGGCGCCGT CCTTTCAGTG TGGCGATCAA CGTGGCGCCG
CAACAGCTGG TTCAGCCCTC GTTTGTCGAG GATGTGATGG ACATCCTGAT GGAAACGGGC
CTGGATCCCG CCCGTCTTGA ACTCGAAGTC ACCGAAGCCA GCATCATCGA CGATCAGGCC
CATACCTTGA AGGTGATGCA TAAGCTGAAA TCGATCGGCA TTCGTATTGC GATGGATGAT
TTCGGCACGG GTTACTCTTC GCTTGCGACG CTTCAGGCGT TCCCGTTTGA CAAGATCAAG
ATCGACCGCA GTTTTGTGCA GGATGTTCAC AAGGACGCGC AGCGTGCTGC GATTGTGCGC
TCGACACTGC TCTTGGGCGC GGCGTTGGAT ATTCCAGTGC TGGCTGAAGG GGTCGAAGTG
GAAGACGAGT TGCGCTTTCT GCGCGCGGAG AGCTGCTCGT CGGTTCAGGG CTTTTATTTT
GGCAAACCGA TGCCACGCGA TGATATGCGC GCGATCGCCT GCCGGGATGA TGGTGAGGCG
GACGTCGGTG TCGCCTGA
|
|---|
| Protein sequence | MYRLLDCITQ EHDYAFVAVA ALICVIGSLL SVHMSGRLTE WTGKRKIVQL PLAGLVTGAT
IWSTHFIAMT AYDPGYEHGY EPVLTATSLF VGVIGSFAAN ASLAFVPGRG APVLAGGLFG
LTVSAMHYTG MQAYLVPGTL YWNTGAVAAS VLLGVGLGAL SYVLMARPMR GIVGRLGPAL
VMVLAICLMH FTGMSAIEVL FDVAVDVPPK TISDNAMALL VFAVTAIILL IAMASASIEV
NMEDDARDQL NHAATHDPLT GMPNRMWLTR KLDALKIRLD ENETRRCAIM TIDLNLFKEV
NDVYGHSAGD AVLRCVALRM MQHEGEGECV TRVGGDEFVA IKEGFRRMEE VLSFAERLHA
AIVEPVDLED VSLRVGASIG IATTMDDGRD PADLLHKSDV AMYRAKSDPD TPICRFNAEM
DRRSREKTQI VHDLRLAVDN DEFELVYQLQ NALDTMEPVG FEVLLRWNHP KRGRVSPDVF
IPIAEETGLI RDIGHWVLRE ACREASLWRR PFSVAINVAP QQLVQPSFVE DVMDILMETG
LDPARLELEV TEASIIDDQA HTLKVMHKLK SIGIRIAMDD FGTGYSSLAT LQAFPFDKIK
IDRSFVQDVH KDAQRAAIVR STLLLGAALD IPVLAEGVEV EDELRFLRAE SCSSVQGFYF
GKPMPRDDMR AIACRDDGEA DVGVA
|
|---|
| |