| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0156 |
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| Symbol | |
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| ID | 4078823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 171551 |
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| End bp | 173017 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005450 |
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| Product | GntR family transcriptional regulator |
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| Protein accession | YP_612151 |
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| Protein GI | 99079997 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCATTT CCGTCGAAAC GTTTTTTCTC AATACCGATG CGCAGGGCAC GTTACAGGCC
CAGATCCAGG AGATGATTGC CGCTGGCATT CTCTCGGGGC GGTTTCGCGC GGGTGAAAAA
CTGCCCTCAT CACGCAAATT GGCGCAGCAT CTCGGGGTGA GCCGCATCAC CGTGACGCTG
GCCTATACGG AACTTGTGGC AAATGACTAT CTGAGCGCTC GCGGACGGTC GGGATATTTC
GTCTCCCAGA CCGCGCCGGT GCCGCCCTCT TTCTCGCCTA TTCAAAAAGA AGCGGACAGC
GTCGATTGGA ACCGCGCCAT CACTCAGGAT TTCACCGGCG GCGACAGCCC CCCCAAACCG
CGTGACTGGC GCAACTATCG CTATCCCTTC ATCTACGGGC AGGCGGATGC CACCCTGTTT
GATCACGCCA ACTGGCGCCT CTGCGCGCTC CGGGCGCTCG GGCAAAAGGA CTTTGCTGCG
ATGACCGGCG ATTACTTTGA TCAGGATGAC CCGCTCTTGA TCGAATATAT CGCCCGCAAC
ACGCTGCCGC GCCGAGGGGT GATTGCCCGG CCCGAGGAAA TCCTGATCAC GCTGGGTGCA
CAAAACGCGC TCTGGACCGT GGTGCAGCTG TTGTTGCAGC CCGGCCGCAA GGCCGCCATT
GAAGACCCGA GCTATTACAC GCTGCGTGAC CAACTCAGTC ATACAGGCTG CGATCTGGAT
GTGATCGCGG TGGATGAGGA CGGGTTGCCG CCAGCACAGA TCGCAACCAA CACCGATGTG
ATTTTCACCA CTCCGAGCCA TCAGAGTCCG ACCACCGCGA CAATGCCAAT GGCGCGCCGC
AAGGCGCTGT TGTCGCGCGC CACTGAAATC GGTGCGGTGG TAGTGGAGGA CGACTATGAA
TTCGAGATGT CCTTTCGCAA TCAGCCCTCG CCTGCGCTCA AATCCATCGA CCGCGATGGG
CGGGTGATCT ATCTGGGCAG CTTCTCCAAA TCGCTCTTTC CGGGGTTGCG GTTGGGGTAT
CTGGTGGGGT CGGAGCCCTT CATCCGACAG GCGCGCGCAC TCAGGGCCAA TGTCTTGCGC
CATCCGCCGG GCCATGTGCA GCGCACCGTT GCCTATTTCC TGTCTCTTGG TCACTACGAC
GCGCAAATCC GGCGCACCGC CAAAGTCCTG CAAGAGCGCC GCGCCGTACT GGAGCGCGCG
GTCGAGGCCG AAGGATTGTG CCCCGCCAAT CGCAGCCTAT ACGGGGGATC CTCTCTCTGG
ATGCAGGCCC CTGATCAGGT CAACATGGGG CAGGTGGGCC TGAAGCTGCG CGAAAAAGGT
GTGTTGATCG AACCCGGCGC GCCCTTTTTT GCGCGAGACA CTCGGCGGCA CAACTTCTAC
CGGCTCGGAT ATTCGTCGAT CGCCTCAGAG CGCATCCCGC AAGGCATCGC ACATGTGGCC
GAGGCGATCC GGGATAGCCA GTCCTGA
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| Protein sequence | MAISVETFFL NTDAQGTLQA QIQEMIAAGI LSGRFRAGEK LPSSRKLAQH LGVSRITVTL
AYTELVANDY LSARGRSGYF VSQTAPVPPS FSPIQKEADS VDWNRAITQD FTGGDSPPKP
RDWRNYRYPF IYGQADATLF DHANWRLCAL RALGQKDFAA MTGDYFDQDD PLLIEYIARN
TLPRRGVIAR PEEILITLGA QNALWTVVQL LLQPGRKAAI EDPSYYTLRD QLSHTGCDLD
VIAVDEDGLP PAQIATNTDV IFTTPSHQSP TTATMPMARR KALLSRATEI GAVVVEDDYE
FEMSFRNQPS PALKSIDRDG RVIYLGSFSK SLFPGLRLGY LVGSEPFIRQ ARALRANVLR
HPPGHVQRTV AYFLSLGHYD AQIRRTAKVL QERRAVLERA VEAEGLCPAN RSLYGGSSLW
MQAPDQVNMG QVGLKLREKG VLIEPGAPFF ARDTRRHNFY RLGYSSIASE RIPQGIAHVA
EAIRDSQS
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