| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0154 |
|---|
| Symbol | |
|---|
| ID | 4078821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 168851 |
|---|
| End bp | 169603 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638005448 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612149 |
|---|
| Protein GI | 99079995 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.418576 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGTGG ATTTGCCCTT TGCGCTCACG GCGATGCAGG GGCTGTTTCT GGCAGCTGCC
CTGTTTTTCG CGGCCGTCAT TCGCGGCTAT TCGGGCTTTG GCTTCTCGGC GATCTTTATC
GTGATCGCCT CGATGGTCAC CAATCCACTG CCGCTCATTC CGGTGGTCTT CACCTGCGAG
ATCGCCATGA CCGCGTTTCA GGCGCGTGGC ATCCGGGCGC ATATCGACTG GCACCGCGCG
ATTGCGTTGC TGGTAGGGGC CGCAATCGCG GTGATCCCGG CTGTCGCCTT GATGGCCCGG
CTCGAGCCCA CGCATGCGCG GATGGTGGTC TCGGCGCTTA TCTTGCTGCT GAGCCTCATC
TTGCTGAGCG GCTGGCAACT GCGTCGCCCC ATTGGTGCCC TCGGGCACGC TGGGGTCGGT
ATTCTTTCTG GGACCGCCAA TGCCGCAGGC GTTGGTGGCC TGCCGACAGC CGCCTTTTTA
TCCGCGCAAG CCATGCCGCC GGCCGCTTTT CGAGCGACCA TGATCATCTT CCTGACGGGA
ATTGACCTCA TGGCTTTGCC GACGATGTCG GCGCATGGGC TTGTGACCTC CGAAACCGCT
TGGGCCGCCG TCATGGCCTT TCCGATACTC GCCCTGGGCG TGTGGTGCGG CAGCAGGGGC
TTTGCCAATG CGCGACCCGA TGGTTTTCGC CAAAAGGTCG TGATCCTTCT GGCGACGCTT
GCAACCATCA GCCTGATACG GGCGATGTTC TGA
|
|---|
| Protein sequence | MLVDLPFALT AMQGLFLAAA LFFAAVIRGY SGFGFSAIFI VIASMVTNPL PLIPVVFTCE
IAMTAFQARG IRAHIDWHRA IALLVGAAIA VIPAVALMAR LEPTHARMVV SALILLLSLI
LLSGWQLRRP IGALGHAGVG ILSGTANAAG VGGLPTAAFL SAQAMPPAAF RATMIIFLTG
IDLMALPTMS AHGLVTSETA WAAVMAFPIL ALGVWCGSRG FANARPDGFR QKVVILLATL
ATISLIRAMF
|
|---|
| |