Gene TM1040_0151 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0151 
Symbol 
ID4078818 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp166208 
End bp167086 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content63% 
IMG OID638005445 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_612146 
Protein GI99079992 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACCACG GCACAGAGAA TACCGGAACC GATGCGTTCC TTTCGGTGCG GCCGCGTCTT 
TTCGCGGTCG CCTATCGCAT GTTGGGCAGT GTCGCCGATG CAGAAGACAT CCTGCAGGAC
GCGTATTTGC GCTGGCAATC GGCACCACGA GGCGAGGTGC GCGACCCAAC CGGCTATCTC
GTGCGGGTGG TCACACGGCT CTGTCTCGAC CAGTTGAAAT CGGCGCGTGT CAAACGCGAG
ACTTACACGG GGGCCTGGCT GCCCGAACCG CTGCTGACCG AAGATCCCGC AGAGCTGATC
GATCATGATG TCTCGGTGGC GCTTTTGCTG GCGCTTGAAC GTCTGACCCC GCTCGAACGG
GCCGCGTTCT TGCTGCATGA CGTCTTTGGC AACAGCCATG ACGAGGTAGC GAGTGCCCTC
GACCGCAGCC CATCTGCGTG CCGCCAACTG GTATCGCGCG CAAGACGTCA TGTGCAATCC
GAACGCCCGC GCAGCCAGGT TGCCCCCGAA GAGAGCCGGG CCCTGACCGA GGCCTTCTTT
CGTGCCTCAA AGACCGGCGA CATGGCGGCG TTGACGCAGC TTCTGGCGCA GGATGTGGAA
TTGGTCAGTG ACGGGGGCGG CAAGGCCATG GCGGCGCTCA ACCCGATTTA CGGACGCGAC
AAGGTGATGC GCCTTGCCGA AGGGCTTGCA CGCAAATACG GCGCACATCT GCCGCCGCGC
TGGCGGTTTG CGATGCTGAA CGGCCTGCCC GCGATCCTCA GCCAAGAGCC AGAAGGGCTG
GTTCAAGCGA CCGCACTGGA AATCCGCGAC GGGCGGATCG CCAAGGTCTA TGTGATCCGC
AACCCAGAAA AGACCGCGCA TCTGGCCGCC GTGCTGTAA
 
Protein sequence
MNHGTENTGT DAFLSVRPRL FAVAYRMLGS VADAEDILQD AYLRWQSAPR GEVRDPTGYL 
VRVVTRLCLD QLKSARVKRE TYTGAWLPEP LLTEDPAELI DHDVSVALLL ALERLTPLER
AAFLLHDVFG NSHDEVASAL DRSPSACRQL VSRARRHVQS ERPRSQVAPE ESRALTEAFF
RASKTGDMAA LTQLLAQDVE LVSDGGGKAM AALNPIYGRD KVMRLAEGLA RKYGAHLPPR
WRFAMLNGLP AILSQEPEGL VQATALEIRD GRIAKVYVIR NPEKTAHLAA VL