Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0151 |
Symbol | |
ID | 4078818 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 166208 |
End bp | 167086 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638005445 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_612146 |
Protein GI | 99079992 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACCACG GCACAGAGAA TACCGGAACC GATGCGTTCC TTTCGGTGCG GCCGCGTCTT TTCGCGGTCG CCTATCGCAT GTTGGGCAGT GTCGCCGATG CAGAAGACAT CCTGCAGGAC GCGTATTTGC GCTGGCAATC GGCACCACGA GGCGAGGTGC GCGACCCAAC CGGCTATCTC GTGCGGGTGG TCACACGGCT CTGTCTCGAC CAGTTGAAAT CGGCGCGTGT CAAACGCGAG ACTTACACGG GGGCCTGGCT GCCCGAACCG CTGCTGACCG AAGATCCCGC AGAGCTGATC GATCATGATG TCTCGGTGGC GCTTTTGCTG GCGCTTGAAC GTCTGACCCC GCTCGAACGG GCCGCGTTCT TGCTGCATGA CGTCTTTGGC AACAGCCATG ACGAGGTAGC GAGTGCCCTC GACCGCAGCC CATCTGCGTG CCGCCAACTG GTATCGCGCG CAAGACGTCA TGTGCAATCC GAACGCCCGC GCAGCCAGGT TGCCCCCGAA GAGAGCCGGG CCCTGACCGA GGCCTTCTTT CGTGCCTCAA AGACCGGCGA CATGGCGGCG TTGACGCAGC TTCTGGCGCA GGATGTGGAA TTGGTCAGTG ACGGGGGCGG CAAGGCCATG GCGGCGCTCA ACCCGATTTA CGGACGCGAC AAGGTGATGC GCCTTGCCGA AGGGCTTGCA CGCAAATACG GCGCACATCT GCCGCCGCGC TGGCGGTTTG CGATGCTGAA CGGCCTGCCC GCGATCCTCA GCCAAGAGCC AGAAGGGCTG GTTCAAGCGA CCGCACTGGA AATCCGCGAC GGGCGGATCG CCAAGGTCTA TGTGATCCGC AACCCAGAAA AGACCGCGCA TCTGGCCGCC GTGCTGTAA
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Protein sequence | MNHGTENTGT DAFLSVRPRL FAVAYRMLGS VADAEDILQD AYLRWQSAPR GEVRDPTGYL VRVVTRLCLD QLKSARVKRE TYTGAWLPEP LLTEDPAELI DHDVSVALLL ALERLTPLER AAFLLHDVFG NSHDEVASAL DRSPSACRQL VSRARRHVQS ERPRSQVAPE ESRALTEAFF RASKTGDMAA LTQLLAQDVE LVSDGGGKAM AALNPIYGRD KVMRLAEGLA RKYGAHLPPR WRFAMLNGLP AILSQEPEGL VQATALEIRD GRIAKVYVIR NPEKTAHLAA VL
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