Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0130 |
Symbol | |
ID | 4078735 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 137814 |
End bp | 140432 |
Gene Length | 2619 bp |
Protein Length | 872 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638005418 |
Product | ATPase AAA-2 |
Protein accession | YP_612125 |
Protein GI | 99079971 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0581017 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACTTGA ACAAGTTCAC TGAACGGGCG CGTGGTTTTG TGCAGGCGTC CCAGACGATT GCGTTGCGTG AAGGCCACCA GCGCCTGACA CCGGAACATA TCCTGAAAGC ATTGCTCGAC GACGATCAAG GCATGGCGTC GAACCTGATT GCGCACGCGG GCGGGAACAT CGCGCGTGTG AGCGAGGCAG TAGAAGCCGC GATCGGCAAG TTGCCGAAGG TTTCTGGCGA TGCTGGTCAG ATCTATCTGG ACGGGCAAAC CGCCAAGGTT CTGGATGAAG CGGCCAAGGT GGCCGAAAAA GCGGGCGACA GCTTTGTCCC GGTCGAGCGA CTGCTGACAG CGCTTGCCCT CGTGAAATCC AAGGCAAAGG ATGCGCTGGA CGCAGGTGGC GTGACGGCGC AGAAGCTCAA TGAGGCGATC AACGACGTAC GCAAGGGGCG CACGGCGGAT ACCGCAACCG CAGAGGATAC TTATGAGGCG CTGAAGAAGT TCACCCTCGA CCTCACGGAG CGTGCGAGAG AGGGCAAGAT CGACCCGATC ATTGGCCGCG ATGACGAAAT TCGCCGCGCC ATGCAGGTTC TGTCGCGTCG CACCAAGAAC AACCCTGTGC TGATCGGCGA GCCGGGCGTG GGTAAAACCG CGATTGCCGA AGGCATGGCT TTGCGGATCG TCAATGGCGA CGTGCCCGAG AGCCTCAAGG ACAAGCGTCT GCTAGCGCTC GACATGGGCG CGCTTATTGC GGGTGCGAAA TATCGCGGTG AGTTCGAGGA ACGCCTCAAG GGCATCCTCA ATGAGGTGAC CGATGCGGCG GGCGAAATCA TTCTGTTTAT CGACGAGATG CATACCCTTG TAGGGGCAGG CAAATCCGAT GGCGCGATGG ATGCGGCCAA CCTCATCAAG CCGGCACTTG CTCGCGGTGA GCTGCACTGT ATCGGCGCAA CCACGCTCGA TGAGTATCGT AAATACGTAG AGAAGGACGC AGCCCTGGCC CGCCGCTTCC AGCCTGTCAT GGTCACGGAG CCGACGGTGG AAGACACGAT TTCCATCCTG CGTGGCATCA AGGAAAAGTA CGAGCTGCAC CACGGTGTCC GCATTGCGGA TGCGGCGCTG GTGTCTGCCG CTACGCTCTC GAACCGCTAT ATCACCGACC GGTTCCTGCC CGACAAGGCG ATTGACCTTA TGGACGAGGC GGCATCGCGC CTGCGGATGG AGGTGGACTC CAAACCCGAA GAGCTCGACG CGCTGGATCG GCAGATCCTG CAGATGCAGA TCGAAGAAGA AGCGCTGAAG CTCGAGGATG ATGCGGCGTC GAAGGACCGG TTGGAGCATC TCCAGAAGGA ACTGGCAGAC CTGCAGGAGC GTTCGCGCGA AATGACCGCG CAATGGCAGT CCGAGCGTGA CAAGCTCGCC TCTGCGCGTG ATCTGAAAGA GCAGCTTGAT CGCGCACGTG CCGAACTCGA CATCGCCAAA CGCGAGGGGA ATCTCGCCAA GGCGGGTGAG CTGTCTTATG GCGTCATTCC GGGGTTGGAA AAGCAGCTCT CTGAGGCCGA ACAGAAAGAA GAGCAGGGCC TGATGGTCGA GGAAGCGGTG CGCCCGGAGC AGATTGCAGC TGTGGTGGAA CGCTGGACCG GTATTCCGAC CTCAAAGATG TTGGAGGGCG AGCGCGAGAA GCTCTTGCGG ATGGAAGATG GCCTGCACAA GCGCGTCATT GGTCAGAACG CCGCCGTGAC GGCCGTGGCT AACGCGGTGC GTCGGGCGCG CGCGGGGCTC AATGATGAGA ACCGTCCGCT GGGGTCCTTC CTATTCCTTG GGCCGACCGG CGTGGGGAAA ACCGAGCTCA CCAAAGCTGT GGCCGAGTTC CTCTTTGACA ATGACAGCGC GATGGTACGC ATCGACATGT CGGAGTTCAT GGAGAAACAC GCAGTCGCAC GTCTGATCGG TGCCCCTCCG GGCTATGTCG GGTATGACGA GGGCGGCGTG CTCACCGAGG CGGTGCGGCG CAGACCTTAT CAGGTGGTTC TGTTTGACGA GGTCGAAAAG GCCCACCCGG ACGTGTTCAA CGTGCTCTTG CAGGTGCTCG ATGATGGCGT GCTGACCGAT GGTCAGGGCC GGACCGTGGA CTTCAAGCAG ACGCTGATCA TCCTGACATC AAACCTCGGA GCGCAGGCGC TGAGTCAGCT GCCAGATGGC GCGGATGCAG CAGATGCCAA ACGCGACGTG ATGGATGCGG TGCGGGCACA CTTCCGGCCC GAGTTCCTGA ACCGTCTGGA TGAGACCGTG ATCTTTGACC GTCTGGGACG GCACGATATG GACGGTATCG TCGAAATCCA GCTTGGGCGT CTCGCCAAGC GTCTGGCGCA ACGCAAAATC ACGCTGGAGC TGGATGAGGG GGCAAAGACC TGGCTCGCAG ATGAGGGCTA CGACCCGGTG TTCGGGGCGC GTCCGCTCAA ACGCGTGATC CAGCGCGCCT TGCAAAACCC GTTGGCCGAG GCCCTGCTGG CTGGCGACAT CAAGGACGGT GAAATCGTTC CCGTGTCTGC CGGGGCTGAG GGGCTGGTGA TCGGGGATCG CGTCGGCAGC TCCGATCGTC CGCTGCCGGA TGATGCCGTG GTGCATTGA
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Protein sequence | MDLNKFTERA RGFVQASQTI ALREGHQRLT PEHILKALLD DDQGMASNLI AHAGGNIARV SEAVEAAIGK LPKVSGDAGQ IYLDGQTAKV LDEAAKVAEK AGDSFVPVER LLTALALVKS KAKDALDAGG VTAQKLNEAI NDVRKGRTAD TATAEDTYEA LKKFTLDLTE RAREGKIDPI IGRDDEIRRA MQVLSRRTKN NPVLIGEPGV GKTAIAEGMA LRIVNGDVPE SLKDKRLLAL DMGALIAGAK YRGEFEERLK GILNEVTDAA GEIILFIDEM HTLVGAGKSD GAMDAANLIK PALARGELHC IGATTLDEYR KYVEKDAALA RRFQPVMVTE PTVEDTISIL RGIKEKYELH HGVRIADAAL VSAATLSNRY ITDRFLPDKA IDLMDEAASR LRMEVDSKPE ELDALDRQIL QMQIEEEALK LEDDAASKDR LEHLQKELAD LQERSREMTA QWQSERDKLA SARDLKEQLD RARAELDIAK REGNLAKAGE LSYGVIPGLE KQLSEAEQKE EQGLMVEEAV RPEQIAAVVE RWTGIPTSKM LEGEREKLLR MEDGLHKRVI GQNAAVTAVA NAVRRARAGL NDENRPLGSF LFLGPTGVGK TELTKAVAEF LFDNDSAMVR IDMSEFMEKH AVARLIGAPP GYVGYDEGGV LTEAVRRRPY QVVLFDEVEK AHPDVFNVLL QVLDDGVLTD GQGRTVDFKQ TLIILTSNLG AQALSQLPDG ADAADAKRDV MDAVRAHFRP EFLNRLDETV IFDRLGRHDM DGIVEIQLGR LAKRLAQRKI TLELDEGAKT WLADEGYDPV FGARPLKRVI QRALQNPLAE ALLAGDIKDG EIVPVSAGAE GLVIGDRVGS SDRPLPDDAV VH
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