Gene TM1040_0130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0130 
Symbol 
ID4078735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp137814 
End bp140432 
Gene Length2619 bp 
Protein Length872 aa 
Translation table11 
GC content61% 
IMG OID638005418 
ProductATPase AAA-2 
Protein accessionYP_612125 
Protein GI99079971 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0542] ATPases with chaperone activity, ATP-binding subunit 
TIGRFAM ID[TIGR03346] ATP-dependent chaperone ClpB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0581017 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTTGA ACAAGTTCAC TGAACGGGCG CGTGGTTTTG TGCAGGCGTC CCAGACGATT 
GCGTTGCGTG AAGGCCACCA GCGCCTGACA CCGGAACATA TCCTGAAAGC ATTGCTCGAC
GACGATCAAG GCATGGCGTC GAACCTGATT GCGCACGCGG GCGGGAACAT CGCGCGTGTG
AGCGAGGCAG TAGAAGCCGC GATCGGCAAG TTGCCGAAGG TTTCTGGCGA TGCTGGTCAG
ATCTATCTGG ACGGGCAAAC CGCCAAGGTT CTGGATGAAG CGGCCAAGGT GGCCGAAAAA
GCGGGCGACA GCTTTGTCCC GGTCGAGCGA CTGCTGACAG CGCTTGCCCT CGTGAAATCC
AAGGCAAAGG ATGCGCTGGA CGCAGGTGGC GTGACGGCGC AGAAGCTCAA TGAGGCGATC
AACGACGTAC GCAAGGGGCG CACGGCGGAT ACCGCAACCG CAGAGGATAC TTATGAGGCG
CTGAAGAAGT TCACCCTCGA CCTCACGGAG CGTGCGAGAG AGGGCAAGAT CGACCCGATC
ATTGGCCGCG ATGACGAAAT TCGCCGCGCC ATGCAGGTTC TGTCGCGTCG CACCAAGAAC
AACCCTGTGC TGATCGGCGA GCCGGGCGTG GGTAAAACCG CGATTGCCGA AGGCATGGCT
TTGCGGATCG TCAATGGCGA CGTGCCCGAG AGCCTCAAGG ACAAGCGTCT GCTAGCGCTC
GACATGGGCG CGCTTATTGC GGGTGCGAAA TATCGCGGTG AGTTCGAGGA ACGCCTCAAG
GGCATCCTCA ATGAGGTGAC CGATGCGGCG GGCGAAATCA TTCTGTTTAT CGACGAGATG
CATACCCTTG TAGGGGCAGG CAAATCCGAT GGCGCGATGG ATGCGGCCAA CCTCATCAAG
CCGGCACTTG CTCGCGGTGA GCTGCACTGT ATCGGCGCAA CCACGCTCGA TGAGTATCGT
AAATACGTAG AGAAGGACGC AGCCCTGGCC CGCCGCTTCC AGCCTGTCAT GGTCACGGAG
CCGACGGTGG AAGACACGAT TTCCATCCTG CGTGGCATCA AGGAAAAGTA CGAGCTGCAC
CACGGTGTCC GCATTGCGGA TGCGGCGCTG GTGTCTGCCG CTACGCTCTC GAACCGCTAT
ATCACCGACC GGTTCCTGCC CGACAAGGCG ATTGACCTTA TGGACGAGGC GGCATCGCGC
CTGCGGATGG AGGTGGACTC CAAACCCGAA GAGCTCGACG CGCTGGATCG GCAGATCCTG
CAGATGCAGA TCGAAGAAGA AGCGCTGAAG CTCGAGGATG ATGCGGCGTC GAAGGACCGG
TTGGAGCATC TCCAGAAGGA ACTGGCAGAC CTGCAGGAGC GTTCGCGCGA AATGACCGCG
CAATGGCAGT CCGAGCGTGA CAAGCTCGCC TCTGCGCGTG ATCTGAAAGA GCAGCTTGAT
CGCGCACGTG CCGAACTCGA CATCGCCAAA CGCGAGGGGA ATCTCGCCAA GGCGGGTGAG
CTGTCTTATG GCGTCATTCC GGGGTTGGAA AAGCAGCTCT CTGAGGCCGA ACAGAAAGAA
GAGCAGGGCC TGATGGTCGA GGAAGCGGTG CGCCCGGAGC AGATTGCAGC TGTGGTGGAA
CGCTGGACCG GTATTCCGAC CTCAAAGATG TTGGAGGGCG AGCGCGAGAA GCTCTTGCGG
ATGGAAGATG GCCTGCACAA GCGCGTCATT GGTCAGAACG CCGCCGTGAC GGCCGTGGCT
AACGCGGTGC GTCGGGCGCG CGCGGGGCTC AATGATGAGA ACCGTCCGCT GGGGTCCTTC
CTATTCCTTG GGCCGACCGG CGTGGGGAAA ACCGAGCTCA CCAAAGCTGT GGCCGAGTTC
CTCTTTGACA ATGACAGCGC GATGGTACGC ATCGACATGT CGGAGTTCAT GGAGAAACAC
GCAGTCGCAC GTCTGATCGG TGCCCCTCCG GGCTATGTCG GGTATGACGA GGGCGGCGTG
CTCACCGAGG CGGTGCGGCG CAGACCTTAT CAGGTGGTTC TGTTTGACGA GGTCGAAAAG
GCCCACCCGG ACGTGTTCAA CGTGCTCTTG CAGGTGCTCG ATGATGGCGT GCTGACCGAT
GGTCAGGGCC GGACCGTGGA CTTCAAGCAG ACGCTGATCA TCCTGACATC AAACCTCGGA
GCGCAGGCGC TGAGTCAGCT GCCAGATGGC GCGGATGCAG CAGATGCCAA ACGCGACGTG
ATGGATGCGG TGCGGGCACA CTTCCGGCCC GAGTTCCTGA ACCGTCTGGA TGAGACCGTG
ATCTTTGACC GTCTGGGACG GCACGATATG GACGGTATCG TCGAAATCCA GCTTGGGCGT
CTCGCCAAGC GTCTGGCGCA ACGCAAAATC ACGCTGGAGC TGGATGAGGG GGCAAAGACC
TGGCTCGCAG ATGAGGGCTA CGACCCGGTG TTCGGGGCGC GTCCGCTCAA ACGCGTGATC
CAGCGCGCCT TGCAAAACCC GTTGGCCGAG GCCCTGCTGG CTGGCGACAT CAAGGACGGT
GAAATCGTTC CCGTGTCTGC CGGGGCTGAG GGGCTGGTGA TCGGGGATCG CGTCGGCAGC
TCCGATCGTC CGCTGCCGGA TGATGCCGTG GTGCATTGA
 
Protein sequence
MDLNKFTERA RGFVQASQTI ALREGHQRLT PEHILKALLD DDQGMASNLI AHAGGNIARV 
SEAVEAAIGK LPKVSGDAGQ IYLDGQTAKV LDEAAKVAEK AGDSFVPVER LLTALALVKS
KAKDALDAGG VTAQKLNEAI NDVRKGRTAD TATAEDTYEA LKKFTLDLTE RAREGKIDPI
IGRDDEIRRA MQVLSRRTKN NPVLIGEPGV GKTAIAEGMA LRIVNGDVPE SLKDKRLLAL
DMGALIAGAK YRGEFEERLK GILNEVTDAA GEIILFIDEM HTLVGAGKSD GAMDAANLIK
PALARGELHC IGATTLDEYR KYVEKDAALA RRFQPVMVTE PTVEDTISIL RGIKEKYELH
HGVRIADAAL VSAATLSNRY ITDRFLPDKA IDLMDEAASR LRMEVDSKPE ELDALDRQIL
QMQIEEEALK LEDDAASKDR LEHLQKELAD LQERSREMTA QWQSERDKLA SARDLKEQLD
RARAELDIAK REGNLAKAGE LSYGVIPGLE KQLSEAEQKE EQGLMVEEAV RPEQIAAVVE
RWTGIPTSKM LEGEREKLLR MEDGLHKRVI GQNAAVTAVA NAVRRARAGL NDENRPLGSF
LFLGPTGVGK TELTKAVAEF LFDNDSAMVR IDMSEFMEKH AVARLIGAPP GYVGYDEGGV
LTEAVRRRPY QVVLFDEVEK AHPDVFNVLL QVLDDGVLTD GQGRTVDFKQ TLIILTSNLG
AQALSQLPDG ADAADAKRDV MDAVRAHFRP EFLNRLDETV IFDRLGRHDM DGIVEIQLGR
LAKRLAQRKI TLELDEGAKT WLADEGYDPV FGARPLKRVI QRALQNPLAE ALLAGDIKDG
EIVPVSAGAE GLVIGDRVGS SDRPLPDDAV VH