| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0118 |
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| Symbol | |
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| ID | 4078703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 124243 |
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| End bp | 125319 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638005405 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_612113 |
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| Protein GI | 99079959 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.301625 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCTATC GTGAAGCCGG GGATTTCAAA CTCTCCTATG TCGAGGACAG TCAGACTTTT
CCGATCAAAT TCGATCGCTA CCGCTACTAT GCGGTGCTCG CTCTGGCCTT TGGCGTGGTG
CCTTTTGTAG TCAATGACTA TTGGGTCAAT GCGATCCTCT TGCCCTTCCT CATCTATGCG
ATTGCGGCGA TTGGGTTGAA TATCCTTGTT GGTTACTGCG GGCAGGTGTC GCTGGGCACC
GGGGGCTTCA TGGCGGTTGG GGCCTATGCC TGCTACAAGC TGATGACAGC CTTTCCCGAA
GTGTCCATGT TTATCCATGT TCTGCTTGCA GGCGGAATCA CCGCGCTGGT CTGCGTGCTC
TTTGGTTTGC CCAGTTTGCG CATCAAGGGA TTTTATCTGG CGGTGGCCAC ATTGGCGGCG
CAGTTCTTCC TGGTCTGGCT CTTCAACCGC GTGCCGTGGT TTTACAACTA TTCCGCTTCT
GGCCAGATCA ACGCGCCCGA GCGTGACGTA TTTGGCATCA TCATCACCGG CCCCAATGCA
CCGGCCTGGG CGACCTATCT GTTCTGCCTG ATTTTCCTGA CCTTCTGCGC CATCGTGGCC
CGCAACCTGA CCCGCGGCAC CCAGGGGCGG ACGTGGATGG CGATCCGGGA CATGGATATC
GCGGCCGAAA TCATCGGGGT GAACCCTTTG AAGGCAAAAA TGACGGCCTT TGCGGTCTCG
GGCTTCTTTG TCGGGATCTC GGGCGCGCTG TTCTTCGCGG TCTACCTCGG GGCGGTCGAA
GTGGGCGAGG CCTTTGGCAT CAACAAGTCG TTCCTTGTCC TCTTCATGGT CATCATTGGC
GGCTTGGGCT CGATCTTTGG CTCTTTTGCG GGCGCCGCGT TCCTGGTGCT GCTGCCGGTG
ATCCTGAAGG TCGTAGGCGT GGATTGGCTG GGTTGGCCGA CGGACATCGT CGCACATTTC
CAGCTGGTGA TCGTGGGTGC GCTGATCATC ACGTTCCTTA TCCTGGAGCC ACACGGCCTT
GCGCAGCTCT GGCGCGTCGC CAAGGAGAAA CTGCGGCTCT GGCCCTTCCC GCACTAG
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| Protein sequence | MFYREAGDFK LSYVEDSQTF PIKFDRYRYY AVLALAFGVV PFVVNDYWVN AILLPFLIYA
IAAIGLNILV GYCGQVSLGT GGFMAVGAYA CYKLMTAFPE VSMFIHVLLA GGITALVCVL
FGLPSLRIKG FYLAVATLAA QFFLVWLFNR VPWFYNYSAS GQINAPERDV FGIIITGPNA
PAWATYLFCL IFLTFCAIVA RNLTRGTQGR TWMAIRDMDI AAEIIGVNPL KAKMTAFAVS
GFFVGISGAL FFAVYLGAVE VGEAFGINKS FLVLFMVIIG GLGSIFGSFA GAAFLVLLPV
ILKVVGVDWL GWPTDIVAHF QLVIVGALII TFLILEPHGL AQLWRVAKEK LRLWPFPH
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