| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0112 |
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| Symbol | |
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| ID | 4078697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 117301 |
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| End bp | 119205 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638005399 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_612107 |
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| Protein GI | 99079953 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGA ACACGGCACA ACGCATGGCG ATGATCGACG CAGGCCTGAA CCTCATTGCG
CAGGCCATGT CGATCTACGA CCGCAACCTG CGCCTTGCGG CCTGCAACCA TCGCTTTCAG
GAAATGTTTT CACTGCCGCC CGAATTGGTG CAAGAGGGCG CGACGTTCGA AGACACCATC
CGCTTTATCG CGGTACAGGG CGACTATGGC CCCATTGATG ACATCGATTC GTTTGTGCAG
CTGCGGGTGG AACAGGCCCG CGCCTTTGTG CCCCATTACG TCGAGCGCCA GCGTGCCAAT
GGCCATGTGA TTTCGATCGA GGGCGCGCCT CTTCCGGAGG GGGGCTGGGT CACGGTCTAC
ACCGACATCA CCCGCACCAA GCGGGTTGAA GAATTGCTCC GCGCCCGCTC CGAGGAGCTC
TCGGATCAGG TGATGAGCTA CACAGAAGAG CTCTCGGCCA CCAACCGAAA GCTTGCAGCC
ACGATCACCA CACTTGAAGA GACCCAGCGC CAGCTGACGC AGACCGAGGC CCGCACCCGG
CTCACGACCG AAATGATGCC CGCCCATATC GCGCATGTGG ATGCGGACGG GCATTATACC
TTTACCAACG GACGTTTGAG CAAAGTGTTT CCCGGCCGCC CCTCCGACAT TCTCGGCCAG
CATATTGCCG AGGCGCTCGG GTCCGCCGCC TATGCCCGCA TCGCACCGCA CCTCTCGGCG
GCCTACCAGG GTGAAAGCCC GGTGTTTGAG TTCACCGAGG ATCAGGACAG CCGCCGCCTG
CGCGTGGCGT TTACGCCCGA CAACGAAGGC GGGGTGTTCA TCCTGTCGAT GGATGTGACC
GAGGAAACCC AGACCCGCGT GGCCCTGCAA CAGGCCCGCA AGCGCGAGAT CGCCGCGCAG
ATGACCAGCG GGCTTGCGCA TGATTTCTCC AACCTTCTGA CCATCATCCT CGGAATGCAG
ACACGCCTTG ATCGGATGAC CCTGCCCGAA GGCGCGGGCG AGCTCGTGGA GGCCACCCTG
TCAGCCGCGC GGCGCGGCGG GCGGCTCTTG GATCGGATGG CTGAAATGAC CAGTCACCGT
GGCCTGCGCC CGCAAGCCAC CGACCTGCAC GCGCTCTTGG ACGAGATGAA GATCCTCGCC
ACGCCGTCAC TACCACAGGG CATCGGTCTC AGCGTGCTGG ACAACACAAG CGAGGGGCCG
GTCCTTTTGG ATCCGGGGCG GCTGCAGGAC GCGCTTTTGA ACCTGATTTT GAATGCGCGC
GACGCCTGCG GCACCAGCGG CCAGATCACG GTTGCCGCGC ATCTGGTCGG GCAGACCTGG
ATCGAATTCT CCGTAAGCGA CACAGGCCCC GGCTTTTCAG TGCAAGCGCT TGAGAATGCG
CTCAACCCGT TTTTCACCAC CAAGGGGCAA GAGGGCTCGG GGCTGGGGTT GTCGATGGTC
TATGACATGG TGAAATCCGC CGGGGGGGAC ATCCGCATCA GCAACACCGT CTCCGGCGCG
ATGGTGACGC TGCGCCTGCC CTACCGCCCA GCGCCGATGG CGGCCGGCGG CATTGCCCTT
CTGGTCGAAG ACAGCGACAC GCTTCGGGCG ACCTATCGTC AGGTGCTGAT GGATCTTGGA
TACTCCGTCA TCGAGGCCAC CAGCGTTGAT GAGGCCGTTG CGCTTTTGGC GGATGTCGAA
GGGATTGCAC TGATCCTGTC GGACATCAAA CTGGAAGGCG ATGCCACCGG CGTCGATCTC
TGCACCCGGC TGGGGCCGGA TGCGCCACCC GTGGTACTGA TGACCTCGTT GCCGCATACC
GATCCGCTCT ATCGCGCGGC CCTCACTCTG GCGCCACTCT TGCCAAAACC CTTTGAAAGC
GCGCATCTGA TGGCGCTCCT GCAACAAAAG GCCGACCATG CCTGA
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| Protein sequence | MKQNTAQRMA MIDAGLNLIA QAMSIYDRNL RLAACNHRFQ EMFSLPPELV QEGATFEDTI
RFIAVQGDYG PIDDIDSFVQ LRVEQARAFV PHYVERQRAN GHVISIEGAP LPEGGWVTVY
TDITRTKRVE ELLRARSEEL SDQVMSYTEE LSATNRKLAA TITTLEETQR QLTQTEARTR
LTTEMMPAHI AHVDADGHYT FTNGRLSKVF PGRPSDILGQ HIAEALGSAA YARIAPHLSA
AYQGESPVFE FTEDQDSRRL RVAFTPDNEG GVFILSMDVT EETQTRVALQ QARKREIAAQ
MTSGLAHDFS NLLTIILGMQ TRLDRMTLPE GAGELVEATL SAARRGGRLL DRMAEMTSHR
GLRPQATDLH ALLDEMKILA TPSLPQGIGL SVLDNTSEGP VLLDPGRLQD ALLNLILNAR
DACGTSGQIT VAAHLVGQTW IEFSVSDTGP GFSVQALENA LNPFFTTKGQ EGSGLGLSMV
YDMVKSAGGD IRISNTVSGA MVTLRLPYRP APMAAGGIAL LVEDSDTLRA TYRQVLMDLG
YSVIEATSVD EAVALLADVE GIALILSDIK LEGDATGVDL CTRLGPDAPP VVLMTSLPHT
DPLYRAALTL APLLPKPFES AHLMALLQQK ADHA
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