| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0101 |
|---|
| Symbol | |
|---|
| ID | 4078686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 106640 |
|---|
| End bp | 107566 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638005388 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612096 |
|---|
| Protein GI | 99079942 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1108] ABC-type Mn2+/Zn2+ transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAGCG AATTTGTCAC CCTGTCGCTC ACGCCGCTGC TGATCGGTAT CTTTGCCGCA
GTGGCCTGTG CGCTACCCGG CAACTTCCTG CTGTTGCGCA AACAGGCACT GATCGGGGAT
GCAATCAGCC ATGTTGCCTT GCCGGGCATC GTCGTGGCCT TTTTGCTGAC AGGTGCAATT
TCGACCTGGC CGATGATGCT GGGGGCCGCC GGCGCGGCGG TGGTTGCGGT TGTGATGATC
GAAGGGATCC GGCGTCTCGG GCGGATTGAG CCCGGCGCGG CAATGGGCGT TGTGTTCACC
ACGCTCTTTG CTGCGGGTGT GCTCTTGTTG GAGCAGAGCG ATACGTCCTC TGTACATCTG
GACGTCGAGC ATGCGCTCTA TGGCAACCTT GAGAGCCTGA TCTGGCTGGA TGGCACCGGA
TGGGGGTCAC TTCTCGATCC GGAGGCGCTG GCGTATCTTC CCGTCGAGCT GCCGCGGATG
GCGGCGACAT TGGTTGTCGT GGCCGGGTTT ATCGCGCTCT TCTGGCGGCC CCTGAACATT
TCGACATTTG ATGAAGGCTT TGCCCGAACC ATGGGCCTAC GCACCGATCT CTTGGGGCTT
GCGCTTGTGA TCATGGCGGC GATTGCAGCG GTGGCGGCGT TTGATGCGGT GGGGTCGATC
ATTGTGATCG CAATGTTTAT CTGCCCGCCT GCGGCGGCGC GGATGATGAC CAATCGACTG
GAGATCCAGA TCGCGTGGAG CGTTGTCTTT GCCACGCTCT CGGCCATTCT TGGCTATGTG
CTGGCAGGCT ATGGCCCGCT ATGGATCGGC ATGAACGACG CCGTGAGCGC GGCGGGCATG
ATTGCAACCG TTTCCGGTGT GATCCTCGCC CTCGCGGCGC TCTTTGGCCC CTGCCGCACC
CGTGCGGGTG CGCCCTCGGG CGTCTAG
|
|---|
| Protein sequence | MGSEFVTLSL TPLLIGIFAA VACALPGNFL LLRKQALIGD AISHVALPGI VVAFLLTGAI
STWPMMLGAA GAAVVAVVMI EGIRRLGRIE PGAAMGVVFT TLFAAGVLLL EQSDTSSVHL
DVEHALYGNL ESLIWLDGTG WGSLLDPEAL AYLPVELPRM AATLVVVAGF IALFWRPLNI
STFDEGFART MGLRTDLLGL ALVIMAAIAA VAAFDAVGSI IVIAMFICPP AAARMMTNRL
EIQIAWSVVF ATLSAILGYV LAGYGPLWIG MNDAVSAAGM IATVSGVILA LAALFGPCRT
RAGAPSGV
|
|---|
| |