Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0082 |
Symbol | |
ID | 4078748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 85539 |
End bp | 86606 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638005369 |
Product | type I secretion target repeat-containing protein |
Protein accession | YP_612077 |
Protein GI | 99079923 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGTGGT TGGCCAGTAT CCTCGGAATG GTCGCAGTTG GCAGTGCGAT CATGATTGAT TTTGAGTCCG ATGACGCGGA TTCGGACGAA ACAAATCCCG ATGCCGAAGC GGATGGCACC GGCAGCACAA TCGTCTCGCC TGACGAATTC CTCACGGGCG TCGACCCTGC TGGCAACGAT GCCTCCGACA CCACAGAGAC AGACGAGAGC CCTCAGGTCG CTGACGGTGA CGACACTGAT GAGCGCAATA TCATCCTTGG TACGGAGGAT CTCGATCAGC TCTCTGGCGG CGCGACCGAT GATGAAATCT CGGGGCTGGG GGGCGATGAT CAGATCAACG GCTATGACGG CAATGACTAC CTCAGCGGTG GCGCGGGTGC GGATGACCTT TATGGCGCGG CCGGAGAAGA TACACTCCAC GGCGACGCGG GCGACGATCA CCTCGACGGA GGAGAGGGAC AGGATTCTCT TTCGGGGGGC GACGGCGCTG ATTCCCTGTT GGGCGGGCTG GAGGCGGACA GCTTGCAGGG CGACGCCGGC GACGACACGC TGCATGGCGG CTCCGGCGCA GATGTGGTCG CGGGCGGCGC GGGCAGCGAT GCGGTGCATG GCAACGACGA TGACGACCGT GTGTTTGGCG GCGCGGGCGA GGACACGCTG TTTGGCGGGC GTGGCAATGA CGTGGTCACG GGCGCAGACG ACGATGCAGA GCGCGACTTT ATCAACGGCG GTGACGGCGA CGACACGTTG ATTGCCGGGG CGTCGGATTA CGTCACAGGT GGCGATGGCG CGGACCAGAT ACTGCTTGGC GATTGGATCG CACAAGGCAC TGTCGAGCTG GTCGATTTCA ACAGCGCCGA GGATCAGCTC CTCCTGATCT ATGATAGCGC GCAGGGTCTG CCCGAGCTGG AGCTCGAACC CGACCCGGAC ACGCCGGGAC AGACACTTGT GCGTCTGGAC GGAGAGATCG CCATGCGCCT CACCGGGGCT GAGACCCTGA CAGCAGATGA GATCTTGCTG GTGGAGGCCG AGGCGGGCGA CGTGGCGCAT CTGCCATTGC CAGAATAG
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Protein sequence | MLWLASILGM VAVGSAIMID FESDDADSDE TNPDAEADGT GSTIVSPDEF LTGVDPAGND ASDTTETDES PQVADGDDTD ERNIILGTED LDQLSGGATD DEISGLGGDD QINGYDGNDY LSGGAGADDL YGAAGEDTLH GDAGDDHLDG GEGQDSLSGG DGADSLLGGL EADSLQGDAG DDTLHGGSGA DVVAGGAGSD AVHGNDDDDR VFGGAGEDTL FGGRGNDVVT GADDDAERDF INGGDGDDTL IAGASDYVTG GDGADQILLG DWIAQGTVEL VDFNSAEDQL LLIYDSAQGL PELELEPDPD TPGQTLVRLD GEIAMRLTGA ETLTADEILL VEAEAGDVAH LPLPE
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