| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0072 |
|---|
| Symbol | |
|---|
| ID | 4075969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 74929 |
|---|
| End bp | 75582 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638005359 |
|---|
| Product | ribosomal large subunit pseudouridine synthase A |
|---|
| Protein accession | YP_612067 |
|---|
| Protein GI | 99079913 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTAT CCAGCGAGTA TTGTCCACCG AGCGATCCGC TCGATATCCT GCACCATGAC
GCGCAGCTTC TTGTGGTCAA CAAGCCTGCG GGCCTGTTGT CCGTGCCAGG CAAAGGCGCG
CATTTGGCAG ATTGCCTGAT TGCGCGTATT CAGGCGGCAT TTCCCGAGGC GCTCTTGGTG
CATCGATTGG ATCGCGACAC CTCCGGCGTG ATGGTCTTTG CAATGACGCC CCATGCACAA
CGCCATCTGG GTTTGCAGTT TGAAAAACGG ATGACCAAGA AAGCCTATGT CGCCCGTCTA
ACGGGCCGGT TGGAGCCGCG TTCGGGAACG GTGGATCTGC CCCTGATCGT GGATTGGCCG
AACCGCCCGC TGCAAAAGGT CTGTCACGAG ACGGGCAAAC CCGCGCATAC GGACTGGAAA
GTCATCAGTT ATGGTGAGAA TGAAACCCGC GTGCGGCTTT CGCCCAAGAC GGGTAGGTCT
CATCAGCTGC GCGTGCATAT GCAGTCGCTT GGTCATCCGA TCCTGGGCGA TCCGCTTTAT
GCAAGCGGGG CTGCGTTGGA ACACCCACGC ATGATGCTGC ATTCCGAAGA GCTGCGGCTA
AAGCATCCGG AAGGCGGCGC GTCGCAAAAG TTTCGGGTCA AAGCGCCGTT TTGA
|
|---|
| Protein sequence | MTVSSEYCPP SDPLDILHHD AQLLVVNKPA GLLSVPGKGA HLADCLIARI QAAFPEALLV
HRLDRDTSGV MVFAMTPHAQ RHLGLQFEKR MTKKAYVARL TGRLEPRSGT VDLPLIVDWP
NRPLQKVCHE TGKPAHTDWK VISYGENETR VRLSPKTGRS HQLRVHMQSL GHPILGDPLY
ASGAALEHPR MMLHSEELRL KHPEGGASQK FRVKAPF
|
|---|
| |