| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0053 |
|---|
| Symbol | |
|---|
| ID | 4078716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 56222 |
|---|
| End bp | 57010 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638005340 |
|---|
| Product | exodeoxyribonuclease III |
|---|
| Protein accession | YP_612048 |
|---|
| Protein GI | 99079894 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0708] Exonuclease III |
|---|
| TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.809091 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTTA CCCTTGCCAC ATGGAACATC AACTCCGTGC GTCTACGCGA ACCGATCGTT
GTCAAGCTGC TCGAAGAGGA AGGGCCGGAT GTTCTCTGTC TTCAGGAGTG TAAGAGCCCG
GTGGACAAGA TCCCGATGGA GGCCTTTCGC GCGCTGGGCT ACGAGCATAT GATCGCGCGG
GGGCAGAAGG GCTATAACGG CGTGGCGATC CTGTCGCGCC TGCCGATTGA GGATGTCGGC
GACAAGGATT TCGCCAGCCT GGGTCACGCC CGCCATGTGG CGGGTCGGTT GGAGAATGGT
GTCACAATCC ATAACTTTTA TGTCCCTGCG GGGGGCGACG AGCCCGACCG CGAAAAGAAT
GTGAAGTTTG GCCAGAAACT CGATTACCTC ACGGAGATGC GGGATTGGTT CCATGCGGAA
CGTCCCGAGA AGTCGGTATT GGTCGGTGAT CTCAACATCG CGCCGCGCGA GGATGACGTG
TGGGATCACA AGAAGCTTTT GAAGGTGGTG AGCCACACGC CCATTGAGGT GGAGCATCTG
GATCAGGTGA TGGACGCGGG CGGATGGGCC GATGTGACAC GCAAGGACAT CCCCGAAGGG
CAGCTTTATA GCTGGTGGAG CTATCGGGCA AAGGATTGGG ATGCGGCTGA CAAAGGGCGT
CGCCTCGATC ATGTATGGAC AACGGCGGAT ATTACCAATG CCGCCCACTC CAGCCGGATC
TTGCGCCATG CGCGCGGCTG GGAGAAACCC AGCGATCATG CGCCGGTCTT TGCCACCTTT
GATCTCTGA
|
|---|
| Protein sequence | MSFTLATWNI NSVRLREPIV VKLLEEEGPD VLCLQECKSP VDKIPMEAFR ALGYEHMIAR
GQKGYNGVAI LSRLPIEDVG DKDFASLGHA RHVAGRLENG VTIHNFYVPA GGDEPDREKN
VKFGQKLDYL TEMRDWFHAE RPEKSVLVGD LNIAPREDDV WDHKKLLKVV SHTPIEVEHL
DQVMDAGGWA DVTRKDIPEG QLYSWWSYRA KDWDAADKGR RLDHVWTTAD ITNAAHSSRI
LRHARGWEKP SDHAPVFATF DL
|
|---|
| |