| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0052 |
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| Symbol | |
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| ID | 4078715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 54785 |
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| End bp | 55993 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005339 |
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| Product | gamma-butyrobetaine,2-oxoglutarate dioxygenase |
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| Protein accession | YP_612047 |
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| Protein GI | 99079893 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2175] Probable taurine catabolism dioxygenase |
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| TIGRFAM ID | [TIGR02409] gamma-butyrobetaine hydroxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.543407 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGGTG GCCACCACCG GGTCGTGCCG CTGTGCGCTA AGGCGCAGAC CGCTCTTACA
CACGACATAT CTAACGCCAG GAGGTTTCTC ATGGCACAGG CCGCTTTGCA GCCACAGAAC
GCTTGCGTTC TCCTCTCGTT TTCCGACGGA ACAACGGCGC AGTACCCCTA TATCTGGCTG
CGCGACAACG ACCCGGAAGG GTTTCACCCT GACACGCAGG AACGGATCAC CGATCTTTCT
GCAATATCGC CAGACATTAC GGTGGCAGAT GTCGAGCTGA ACGACTCTCA GCTTCTCATC
CACTGGGAAG GCGCTGATTC CGCCACCAGC CGCTTTGACC TTGATTGGTT GCGCAGCTAT
GTGCCGGGCA CACGCACTGC GGACCCCGCC CGCACCGGGT TTCAGCACTG GCGCTGCGAC
CTGGGCGCAG GTGGGATTCC GCGCGCCACA GCACAAGAGA TCCTGAGCTC AGATCTTGCC
CTGCGGACAT GGCTGGAACA GACCCAAATC TATGGGATCT CCATCGTCGA GGGGCTTGCG
GACAGCACCG AGGCGGGCAT GGATGTGGCA CGCCGTATCG GTTTTTTGCG CCAAACCAAC
TTTGGCGTGA CCTTCGAGGT CAAATCCAAA CCCAACCCCA ACAATCTCGC CTATACCCCG
ATCGCGCTGC CCCTGCATAC GGATCTGACC AACCAGGAAT TGCCGCCCGG GTTTCAGTTC
CTGCACTGTC TTGCGAACGA GGCCAGGGGC GGTGGTTCTC TGTTTTGCGA TGGATATGCC
ATTGCCGAGG ACCTGCGCCG GGATGATCCC GAGAGTTTTG AGCTTCTATC GACCGTCTCG
GTGCCGTTTC GGTTCCACGA TCAGGACACC GACATCCGAA ACCGCAAAAA GGTCATCACG
CTGGATGAGG ACGGGCGCGT GATCGAGATC TGTTTCAATG CCCATTTGGC GGATATCTTT
GACCTAGAGC CCGCGCTGAT GCAGCGCTAC TACCGCGCAT ACCGGAAATT CATGATCCTG
ACGCGCTCAA CCAACTACCT CGTGACGCTC AAGCTCAAAG GTGGCGAGAT GGTTGTGTTT
GACAACAGGC GTGTCCTGCA TGGCCGCGAG GCCTTTGATC CTCAGACCGG GTATCGGCAC
TTGCACGGAT GCTATGTGGA CCGCGGCGAG TTCGAGAGCC GACTGCGCGT TCTGCATCGC
GGGCAGTGA
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| Protein sequence | MTGGHHRVVP LCAKAQTALT HDISNARRFL MAQAALQPQN ACVLLSFSDG TTAQYPYIWL
RDNDPEGFHP DTQERITDLS AISPDITVAD VELNDSQLLI HWEGADSATS RFDLDWLRSY
VPGTRTADPA RTGFQHWRCD LGAGGIPRAT AQEILSSDLA LRTWLEQTQI YGISIVEGLA
DSTEAGMDVA RRIGFLRQTN FGVTFEVKSK PNPNNLAYTP IALPLHTDLT NQELPPGFQF
LHCLANEARG GGSLFCDGYA IAEDLRRDDP ESFELLSTVS VPFRFHDQDT DIRNRKKVIT
LDEDGRVIEI CFNAHLADIF DLEPALMQRY YRAYRKFMIL TRSTNYLVTL KLKGGEMVVF
DNRRVLHGRE AFDPQTGYRH LHGCYVDRGE FESRLRVLHR GQ
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