| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0047 |
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| Symbol | |
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| ID | 4078710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 50494 |
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| End bp | 51438 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005334 |
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| Product | outer membrane porin |
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| Protein accession | YP_612042 |
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| Protein GI | 99079888 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.310717 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGA TTCTCTTCGC TTCGACCGCA CTGGTCGCGA CTGCAGGCGT CGCAGCAGCA
GAACTGACCA TCGGCGGCTC CGCCCGTTTT GGTCTGGCAT ACGACGAGTC CCAAACTGAA
GAGACCCGCA TCGAACAGCG TATGCGCGTC AACATCACCG GCATCGCGGA AACCGACGCT
GGCGTGAAAC TGGAAGCTCG CTTCCGTCTC GAAGCCAACG AAGACTCCCA CGCGAACGAC
ATCTCCGGTC GTGGCCCGGG CGCAGCTGGC TTCGCAGTGT CCTACGGCGG TCTGCGTGTT
GACGTTGGTA ACGTCTCCAA CGTTCTCGAC TCCGGTGACC AGGTTGACTA CTACGGCTAC
GGCGTTGGCT TCACCTCCTT CCTGGAGCAC AATGCCAACT TCAACGGCCC GGCAACCGGC
TTCGGCGCTG GTAGCCAAGA TGCGACCACC ATCAAAGCAC GCTACAACGT TGGCGACTTC
TCCGCATCGC TCTCCTACAA AGAGACCCGT GCGCAGGCAG CAGTTGCAAA CGCACCCGGC
GTTCTGGGTT CCACCGCAGT TGCAGCTGAC GAAGAGTGGC AGCTGGGTCT GGGTTACACC
CTGGCAAACG GCATGGCGAT CGGCGCAGTT TACTCTGACA CCGACTCCTC CGGCGACTAC
TGGGTCATCG GCCTGAACGG CACCGCCGGT GCAGTTGGCT ACTCCGTAAT CGTGGGTGAC
GGCGACAACC AAGCCGACGC TTCCTTCGGT GCGTCCATCA ACTACGAAGT GTCCTCCGCG
ACCTCCATCC GCGCTGTTGT TTCCGACGGT GGCGCAGCCA ACGCAGACAC CTCCTACGGC
CTCGGCTTCC GCCACGGTCT CGGCGGTGGT GTGACCCTCG CAGGTGGTGT TGGTTCCAAG
AACGACAACA CCCTGGCAGA CCTCGGTGTG TCCTTCTCCT TCTAA
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| Protein sequence | MKKILFASTA LVATAGVAAA ELTIGGSARF GLAYDESQTE ETRIEQRMRV NITGIAETDA
GVKLEARFRL EANEDSHAND ISGRGPGAAG FAVSYGGLRV DVGNVSNVLD SGDQVDYYGY
GVGFTSFLEH NANFNGPATG FGAGSQDATT IKARYNVGDF SASLSYKETR AQAAVANAPG
VLGSTAVAAD EEWQLGLGYT LANGMAIGAV YSDTDSSGDY WVIGLNGTAG AVGYSVIVGD
GDNQADASFG ASINYEVSSA TSIRAVVSDG GAANADTSYG LGFRHGLGGG VTLAGGVGSK
NDNTLADLGV SFSF
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