| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0038 |
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| Symbol | |
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| ID | 4076305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 39490 |
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| End bp | 41088 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005325 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_612033 |
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| Protein GI | 99079879 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.216937 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.341252 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCTT TTTCCAAACT AATCGGCTCT GCTGCACTTG GGCTCGCGCT GGGTGTCACC
GCCCTGCCGG CGGTCGCCGC GACACCAGAC AATATGCTGG TCATCGCCAA CCGTATCGAC
GACATCACCA CGCTGGATCC GGCGCAAAGC TTTGAATTTG CGGGCGCGGA TGTGATCCGC
AACATGTACG GCAAGCTGGT GAATTTCGAC CCCTCCAACC TTGAGGCAGG CTATCAGCCC
GATCTGGCCG AAAGCTGGAC TGTCTCGGAA GATGGCAAAA CCATCACCTT CACCATGCGC
GAGGGCGTCA AGTTCCACTC TGGCAACCCG GTTCGGGCGG AAGATGCGGC CTTCTCACTG
CGCCGCGTGA TCAAGCTCAA CAAAACGCCG TCGTTCATCC TGACACAGTT TGGGTTCACT
CCGGAAAACG TCGATGAGAT GATCACCGTC GATGGCAACA CCGTGTCGAT CACGACCGAC
AAACGCTATG CGACCTCCTT TGTGCTGAAC TGCCTGACAG CGACCTTGGG CGCAATCGTC
GACGAAAAAC TGGTGATGGA GCACGACAAG GACGGCGACC TCGGCAACGA GTGGCTGATG
ACCAACTCCG CCGGCTCCGG CCCCTACAAG CTGGCCTCTT GGAAGCCCAA GGAAAGCGTC
ACGCTGACCG CAAACCCAGA CTACTATGAA GGCGCCCCGG CGATGCAGCG CGTGATCGTG
CGTCACGTTC AGGAAAGTGC GACCCAGCGC CTGATGCTGG AGCGCGGCGA TATTGACGTG
GCTCGTGACC TGACCCCTGC GGATGTGGAC GGCCTGGCAG GTATCGACGG CGTCGAAGTG
CAGCGCGAGA TGCGCGGTCG CCTGATGTAT GTGTCCTTCA ACCAAAAGCA TCCTGAGCTC
TCCAAGCCGC AGGTCCGTCA GGCGCTGAAG TATCTGATCG ACTATGACGG CATGGAAAAC
AGCTTCCTCA AGAACTGGTA TGTGAAGCAC CAGAACTTCC TGCCAAAGAC CTATCTGGGT
GCCGTGGATG AAAACCCCTT CTCGCTCAAT ATCGAGAAAG CCAAGGAATT GCTGGCAGAG
GCCGGTGTGC CCGAAGGGCT GGAGCTGACG GTTGGTGTAC GCGAGGCGCA AGAGCGTCTG
GAGATCGCGC AATCGCTGCA AAACACCTTT TCGCAGGCCG GCATCAAGCT GAACCTCGAG
GTCGGCACCG GCAAGCAGGT TCTGGGCAAG TACCGCGCGC GGGAACTGGA CATCTACCTT
GGCGCCTGGG GTCCGGATTA TCCCGATCCT CAGACCAACG CGGGCACATT TGCCTATAAC
CCCGACAACT CTGACGCGGC CAATGCAACG GGCCTTCTGG CGTGGCGCAA CGGTTGGGAC
ACTGCAGGGC TGACCGACAA AGTCGCCGCA GCCGTGGTCG AAGGCGATAC CGTGAAACGT
GCAGACATGT ATCACGAGAT CCAGGCCGAG TTCCGCGATA CCGCGCCTTT TGCCGTGATG
TTCCAGCTGG TTGAACAGGC TGGCATCAGC GAAAAGGTCG AGGGTCTGAA CCTTGGTGGC
GCGATCACCG CAGCCGCTTA CTGGGACGTG ACCAAGTAA
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| Protein sequence | MNAFSKLIGS AALGLALGVT ALPAVAATPD NMLVIANRID DITTLDPAQS FEFAGADVIR
NMYGKLVNFD PSNLEAGYQP DLAESWTVSE DGKTITFTMR EGVKFHSGNP VRAEDAAFSL
RRVIKLNKTP SFILTQFGFT PENVDEMITV DGNTVSITTD KRYATSFVLN CLTATLGAIV
DEKLVMEHDK DGDLGNEWLM TNSAGSGPYK LASWKPKESV TLTANPDYYE GAPAMQRVIV
RHVQESATQR LMLERGDIDV ARDLTPADVD GLAGIDGVEV QREMRGRLMY VSFNQKHPEL
SKPQVRQALK YLIDYDGMEN SFLKNWYVKH QNFLPKTYLG AVDENPFSLN IEKAKELLAE
AGVPEGLELT VGVREAQERL EIAQSLQNTF SQAGIKLNLE VGTGKQVLGK YRARELDIYL
GAWGPDYPDP QTNAGTFAYN PDNSDAANAT GLLAWRNGWD TAGLTDKVAA AVVEGDTVKR
ADMYHEIQAE FRDTAPFAVM FQLVEQAGIS EKVEGLNLGG AITAAAYWDV TK
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