| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0029 |
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| Symbol | |
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| ID | 4076296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 29083 |
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| End bp | 30393 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638005316 |
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| Product | xylose isomerase |
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| Protein accession | YP_612024 |
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| Protein GI | 99079870 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2115] Xylose isomerase |
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| TIGRFAM ID | [TIGR02630] xylose isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.280107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.273997 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACTG GTTTTTTTGG CGATGTTTCC AAGATCACGT TCGAAGGGGC AGACAGCACC
AACCCGCTGG CGTTTCGACA TTACAATCCC GACGAGGTGA TCCTCGGTAA GCGGATGGAA
GAGCATCTGC GGTTTGCAAC CTGCTACTGG CACAACTTTG TGTGGCCGGG CGGTGATCCG
TTTGGTGGTC AGACCTTTGA TCGCCCTTGG TTCAAGGACA CGATGCACGC CGCCAAGCTC
AAGGCCGATG TGGCCTTTGA GATGTTCACG CTGCTGCAGT CGCCCTACTA CTGCTTCCAC
GATGCGGACG TGCGGCCTGA AGGGGCGAAC TTTGCGGAAA ACACACGCAA TCTCAACGAG
ATCGTCGACT ACTTCGCGCA GAAGCAGGAA GAGACCGGCG TGAAGCTCCT CTGGGGCACC
GCGAACCTCT TTTCAAACGC CCGCTACATG TCTGGGGCGT CGACCAACCC GGATCCGGAC
GTCTTTGCGT TTTCGGCGGC GACGATCAAA ACCTGCATGG ATGCCACCCA CCGTTTGGGC
GGCGAGAACT ATGTGCTCTG GGGCGGTCGC GAAGGCTATG AGACGTTGCT GAACACCGAC
CTCGCACAGG AAGATCAGCA AATGGGCCGG ATGCTCAACA TGGTGGTCGA GTATAAGCAT
AAGATTGGCT TCAAAGGCGC GATCCTTGTG GAACCCAAGC CGCAGGAGCC CTCCAAACAT
CAGTACGATT ACGACGCGGC CACCGTTTAC GGTTTCCTCA AGCGTCACGG GCTTGAAAAC
GAGGTGAAGC TCAATCTCGA ACAGGGGCAT GCGATTCTTG CGGGCCATTC GTTTGAACAC
GAAATCGCAA CGGCGCAAGC GCTGGGCATT TTTGGCTCGA TCGATATGAA CCGCAATGAT
TACCAGTCGG GCTGGGATAC AGATCAGTTC CCCAACAATA CGCCCGAGGT GGCGCTGGCC
TATTACCACA TCCTGAAGCA TGGCGGGTTC ACGACAGGGG GCACCAACTT TGATGCCAAG
CTGCGCCGTC AGTCCATCGA TGCCGAGGAT CTCTTGATGG CGCATATCGG CGGCATGGAC
ATCTGTGCGC GTGGCTTCAA GGCGGCTGCG GCTATGATCG AGGACGGTAC CTTGGATCAA
TTTGTTACCG ACCGCTATGC AGGCTGGCAG ACCGATCCGG CGCAGGACAT GCTGGCGGGC
AAACTCTCGC TTGATGAGAT TGCAAAGCGT GTCGAGGCCG AAGATATCAA TCCCAAGCCG
CGCTCCGGGC GGCAGGAATA TCTTGAGAAC CTCATCAACC GGTTTGTCTG A
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| Protein sequence | MTTGFFGDVS KITFEGADST NPLAFRHYNP DEVILGKRME EHLRFATCYW HNFVWPGGDP
FGGQTFDRPW FKDTMHAAKL KADVAFEMFT LLQSPYYCFH DADVRPEGAN FAENTRNLNE
IVDYFAQKQE ETGVKLLWGT ANLFSNARYM SGASTNPDPD VFAFSAATIK TCMDATHRLG
GENYVLWGGR EGYETLLNTD LAQEDQQMGR MLNMVVEYKH KIGFKGAILV EPKPQEPSKH
QYDYDAATVY GFLKRHGLEN EVKLNLEQGH AILAGHSFEH EIATAQALGI FGSIDMNRND
YQSGWDTDQF PNNTPEVALA YYHILKHGGF TTGGTNFDAK LRRQSIDAED LLMAHIGGMD
ICARGFKAAA AMIEDGTLDQ FVTDRYAGWQ TDPAQDMLAG KLSLDEIAKR VEAEDINPKP
RSGRQEYLEN LINRFV
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