| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0012 |
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| Symbol | |
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| ID | 4078675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 13332 |
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| End bp | 14210 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 638005299 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_612007 |
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| Protein GI | 99079853 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0966551 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.591575 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCAGC AAGAAATCCA TGTGAGAATA AGCCACTTGC TGCTGAATTC TGAGGCCATG
TTTCGATATC GCACCGATAA GTCACCGCTG TCCCGCGCCA TCACGCTGAG TGAAGTTGTC
TTTCATTCAG TGGTGCGTAG CGTGCGTTCG AAGCACAACA ACGCCTTTAT GGCGCTCGGG
ATCAACATCA TCCAGTCCGT GCTGTTCGTG ATGTTTTTCT ACTTCATGTT CACGGTCATG
GGCATCAAGG GTGCCGCCAT CCGGGGCGAC TTTCTACTCT ACATGATGTC CGGCGTGTTC
CTGTTCATGA CCCACACCAA AACCGTGGGC GCCGTGGTAG GTGCCGAAGG GGCCTCGAGC
CCCATGATGC AGCACGCCCC GATGAACACA ACCATCGCAA TCCTGTCCGC GGCCCTTGGG
GCGCTTTATC TGCAGGTGTT GTCGATGTTG ATCATTCTCT TTGCGTATCA TGTCGCATTT
ACCCCGATCC ACATCGAGGA GCCGGTCCCC GCCTTTGGCA TGCTGCTATT GGCCTGGGCC
TCCGGGGCTG CAATCGGCCT GGTACTCTAT GTTCTGAAAC CCTGGATGCC AAGTGCGATC
GGGATCATTT CAACGATTTA CCAGCGCTCC AACATGTTGT TTTCAGGCAA AATGGTGCTG
GCGAACACCC TGCCGGGCTA CATGCTGCCA ATGTTCATCT GGAACCCTCT GTTCCATACG
ATCGATCAGG CACGTGGCTA TATCTTCATC AACTATAATC CCCATGTCAC CTGGTGGGAG
TACACCATGT GGCTTGCGCT TATCTTCCTC GTCTTGGGGC TGATGGGAGA GTTTTACACA
AGACGCGCGG TCTCGCTCAG CTGGGGTGCA CGGCGCTAA
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| Protein sequence | MDQQEIHVRI SHLLLNSEAM FRYRTDKSPL SRAITLSEVV FHSVVRSVRS KHNNAFMALG
INIIQSVLFV MFFYFMFTVM GIKGAAIRGD FLLYMMSGVF LFMTHTKTVG AVVGAEGASS
PMMQHAPMNT TIAILSAALG ALYLQVLSML IILFAYHVAF TPIHIEEPVP AFGMLLLAWA
SGAAIGLVLY VLKPWMPSAI GIISTIYQRS NMLFSGKMVL ANTLPGYMLP MFIWNPLFHT
IDQARGYIFI NYNPHVTWWE YTMWLALIFL VLGLMGEFYT RRAVSLSWGA RR
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