| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0011 |
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| Symbol | |
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| ID | 4078674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 12713 |
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| End bp | 13315 |
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| Gene Length | 603 bp |
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| Protein Length | 200 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638005298 |
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| Product | DNA-N1-methyladenine dioxygenase |
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| Protein accession | YP_612006 |
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| Protein GI | 99079852 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3145] Alkylated DNA repair protein |
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| TIGRFAM ID | [TIGR00568] DNA alkylation damage repair protein AlkB |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0179424 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.392162 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACACGGC TGAAGGTGCG TGGATTCGAA ATCCATAAGG GATTTCTATC AGTGCAGGCC
CAAAAGGAGC TGATCTCAGC GCTGCGTCCA GTGCTACGGG CGGCCCCTTT ATTTTCGCCT
GAGGTTCCAG GGGGCGGGCA AATGTCCGTG CGGATGACCT CTGCGGGAGA ATATGGCTGG
TTCAGCGATC CCAGCGGCTA TCGCTATGAA GGCAAACATC CCTCGGGGCG TAAGTGGCCG
GAGATCCCGT CAGAAGTTCT AAACGTTTGG ACCACTCTCG TTGATCGAGA GCGCCTTCCC
GATTGTTGCC TCTTCAACTA CTATGGAGAA GGCGCGCGGA TGGGACTTCA TCAGGACAAG
GATGAAGCGG ATTTCTCCTT CCCTGTGGTG TCGATTTCTC TGGGTGACGA TGGGCTGCTG
CGCCTTGGGG GTACCTCGCG CAAAGAAAAG ACCCAGACGG TTTGGCTCAA TTCGGGAGAT
GTTGTGGTAA TGGGTGGCGA GGCTCGCCTC GCGTATCACG GGATCGACCG TATCCGGTTC
CGCTCCTCGC GCTTGCTGCC CAAAGGGGGG CGCGTGAACC TGACGCTGCG CGTTGTAACG
TAG
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| Protein sequence | MTRLKVRGFE IHKGFLSVQA QKELISALRP VLRAAPLFSP EVPGGGQMSV RMTSAGEYGW
FSDPSGYRYE GKHPSGRKWP EIPSEVLNVW TTLVDRERLP DCCLFNYYGE GARMGLHQDK
DEADFSFPVV SISLGDDGLL RLGGTSRKEK TQTVWLNSGD VVVMGGEARL AYHGIDRIRF
RSSRLLPKGG RVNLTLRVVT
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