| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0007 |
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| Symbol | gyrB |
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| ID | 4078670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 6015 |
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| End bp | 8432 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005294 |
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| Product | DNA gyrase subunit B |
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| Protein accession | YP_612002 |
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| Protein GI | 99079848 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.197226 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.376081 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGAAA ACGAGCAAGC CCCAGCAGAA TATGGCGCAG ATTCCATCAA GGTTCTCAAG
GGGTTGGAGG CCGTGCGCAA GCGGCCTGGC ATGTATATCG GCGACACCGA TGACGGCTCC
GGTCTGCACC ACATGGTTTA CGAAGTCGTC GACAACGGCA TCGACGAGGC GCTGGCCGGC
CATGCGGACC GGGTGACGGT CACGATCCAC GCCGACTCCA GCGTCTCCGT GAGTGATAAT
GGTCGTGGTA TCCCGGTTGA TATCCACGCC GAGGAAGGCG TCTCCGCAGC AGAAGTCATC
ATGACCCAGC TGCACGCGGG CGGTAAGTTC GACAGCAATT CCTACAAGGT CTCCGGCGGC
CTGCACGGGG TCGGCGTATC CGTTGTGAAC GCGCTGTCGG ATTGGCTCGA GTTGCGCATT
TGGCGCAATG GCAAAGAACA CGTCGCTCGC TTTGAGCGCG GGGATACCGT GAAACACCTC
ACCGTGGTGG GGGATTGTGG CGATCGCACC GGGACCGAAG TGCGCTTTTT GGCGTCTACC
GATACGTTCT CCAACCTCGA ATACTCCTTC GAGACACTGG AAAAGCGCCT GCGTGAACTG
GCGTTTCTCA ATTCAGGCGT GCGGATCGTG GTGGCGGACG AGCGCCCGGC CGAACGTCTG
GAGAGCGAGC TTTTCTACGA GGGCGGCGTC AACGAGTTTG TGAAATACCT CGATCGCTCC
AAAACCCCGG TGATGGATGC CCCGATCTAT ATCAAGGGCG AAAAAGACGA CATCGGCGTT
GAGATCGCGA TGTGGTGGAA TGACAGCTAT CACGAGACGG TGCTGCCCTT CACCAACAAC
ATTCCTCAGC GTGATGGAGG CACCCATGTG GCGGGCTTCC GTGGCGCGCT GACGCGGACC
ATCAACAGCT ACGCGCAATC CTCCGGCATC GCGAAAAAGG AGAAAGTCTC CTTCACCGGC
GACGACGCGC GCGAAGGCCT GACTTGTGTG CTCTCTGTCA AAGTCCCGGA TCCCAAATTC
TCGTCCCAGA CCAAGGACAA ACTGGTCTCC TCTGAGGTGC GCCCAGTTGT AGAGAGCCTG
ATGGGGGAAA AACTTGCCGA GTGGTTCGAG GAAAACCCCA ACGTTGCCAA GCAGGTGGTC
GGTAAGATCA TCGAAGCGGC TCTGGCGCGC GAGGCCGCCC GCAAGGCGCG CGAACTCACA
CGTCGCAAAA CCGCGATGGA CGTGAATTTC CTCGCCGGAA AGCTCAAGGA TTGCTCGGAG
AAAGACCCCG CCAAGACCGA AGTCTTCCTT GTCGAGGGGG ACTCTGCGGG GGGCTCGGCG
CAGACTGGAC GCGACCGCCA AACCCAGGCG ATCCTGCCCT TGAAAGGTAA GATCCTGAAC
GTGGAGCGCG CGCGCTTTGA CCGGATGCTC TCGAGCCAGG AAATCGGCAA TCTCGTGATG
GCCCTGGGCA CGGGCATCGG CCGTGACGAG TTCAACATCG AGAAACTGCG CTACCACAAG
ATCGTCATCA TGACCGACGC GGACGTGGAT GGGGCGCACA TCCGGACGCT GCTGCTCACG
TTCTTCTATC GCCAGATGCC GGAACTCATC GAAGGTGGCT ATCTCTATAT TGCGCAGCCG
CCGCTTTATA AGGTCAGCCG TGGCAAGTCC GAGGTGTATC TCAAGGACCA AGCCGCGATG
GACGACTATC TGATCAATCA GGGCGTCGAC GGCGCGTTGC TGCGTCTGGG CGACGGGTCC
GAGATTGCGG GTCAGGATCT CACGCGTGTC GTTGATGAGG CACGCCGTCT GAAGCGTCTT
TTGGACGCGT TCCCGACGCA TTACCCGCGT CACATCCTTG AACAAGCTGC CATTGCTGGG
GCTTTTGTGC CCGGAGCGGT GGATGCGGAT CTGCAGGGCG TTGCGGATAA GGTTGCGGCA
CGACTTGATT TGATCGCGCT GGAGTATGAG CGCGGCTGGC AGGGCCGTAT CACGCAGGAT
CACGGCATCA GGCTGGCACG TATCCTGCGC GGGGTTGAAG AGGTCCGCAC ATTGGATGGT
CCGATGCTGC GCTCTGGCGA AGCGCGCAAG ACCGGTAGCT TCACCAAGTC GCTCCAAGAG
ATTTACGGAG CCCCGGCCAC ACTGCATCGC AAGGATCGTC AGCAAGCGAT CTACGGTCCT
CTAGATCTCC TTAAGGCGAT TTTGGAGGAA GGTGAAAAAG GTCTGACTCT CCAACGCTAC
AAGGGTCTGG GCGAGATGAA CCCCGATCAG CTCTGGGAAA CGACGCTGGA TCCTGATGCA
AGAACCCTGC TGCAGGTGCG TGTCGATGAC ATGATCGAGG CAGATGATCT CTTTACCAAG
CTGATGGGCG ACGTGGTGGA GCCGCGCCGC GAGTTCATCC AGAAAAACGC CCTGAGTGTC
GAGAACCTCG ACTTCTAA
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| Protein sequence | MSENEQAPAE YGADSIKVLK GLEAVRKRPG MYIGDTDDGS GLHHMVYEVV DNGIDEALAG
HADRVTVTIH ADSSVSVSDN GRGIPVDIHA EEGVSAAEVI MTQLHAGGKF DSNSYKVSGG
LHGVGVSVVN ALSDWLELRI WRNGKEHVAR FERGDTVKHL TVVGDCGDRT GTEVRFLAST
DTFSNLEYSF ETLEKRLREL AFLNSGVRIV VADERPAERL ESELFYEGGV NEFVKYLDRS
KTPVMDAPIY IKGEKDDIGV EIAMWWNDSY HETVLPFTNN IPQRDGGTHV AGFRGALTRT
INSYAQSSGI AKKEKVSFTG DDAREGLTCV LSVKVPDPKF SSQTKDKLVS SEVRPVVESL
MGEKLAEWFE ENPNVAKQVV GKIIEAALAR EAARKARELT RRKTAMDVNF LAGKLKDCSE
KDPAKTEVFL VEGDSAGGSA QTGRDRQTQA ILPLKGKILN VERARFDRML SSQEIGNLVM
ALGTGIGRDE FNIEKLRYHK IVIMTDADVD GAHIRTLLLT FFYRQMPELI EGGYLYIAQP
PLYKVSRGKS EVYLKDQAAM DDYLINQGVD GALLRLGDGS EIAGQDLTRV VDEARRLKRL
LDAFPTHYPR HILEQAAIAG AFVPGAVDAD LQGVADKVAA RLDLIALEYE RGWQGRITQD
HGIRLARILR GVEEVRTLDG PMLRSGEARK TGSFTKSLQE IYGAPATLHR KDRQQAIYGP
LDLLKAILEE GEKGLTLQRY KGLGEMNPDQ LWETTLDPDA RTLLQVRVDD MIEADDLFTK
LMGDVVEPRR EFIQKNALSV ENLDF
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