| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0003 |
|---|
| Symbol | recF |
|---|
| ID | 4078666 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2950 |
|---|
| End bp | 4023 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638005290 |
|---|
| Product | recombination protein F |
|---|
| Protein accession | YP_611998 |
|---|
| Protein GI | 99079844 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
|---|
| TIGRFAM ID | [TIGR00611] recF protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0791811 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.40226 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCACT TCCGCTCGCA TTTGCGGGCG GATTTGCATT TGGATACGCG CCCGGTCGCG
ATCCACGGCA ACAATGGTGC GGGCAAGACC AATATCCTTG AGGCAGTATC GTTGTTTTCC
CCGGGGCGGG GGCTCCGGCG CGCCTCCGCG GCAGATATGG CGCGCCAGCC AGAGGCCCTG
GGATGGAAGC TTCGGGGTGT GCTTCAGTCC TCCGGCCAGG CCTATGAGGT GGAGACCTCC
TCTGAAGTTG GTAACGCCAG ACAGGTCAAG ATCGACAACA AGAGTGCAAG CCAGGTTGCG
CTCGGGCGGA TCGCTCGCGT TGTCTGGTTG GTTCCGGCGA TGGATCGCTT GTGGATCGAG
GGGGCTGAAG GGCGGCGGAG ATTTCTCGAT CGCATCGCGC TCAGTTTTGA TCCGGATCAC
GCTGAGGCAA GTCTTTCCTA TGAAAAAGCA ATGCGGGAGC GCAATCGCCT GCTAAAGGAC
AACGTCCGGG ATGCGGCATG GTATCGCGTA CTTGAGGGGC AGATGGCCGA AACCGGCTTT
CGCATCCATC AGGCCCGTAT GGATGCGGTG GCACGGCTGA CAGCTGCTCA AGCTGAGGCA
GAGACCGCAT TTCCGGTGGC GCAGTTGCAG CTTGTGCAGG CCGAAGGGGA TATGCCCGCC
AGTGCCGAAG CGCTGCGCGA AATGCTGGAT GCTGGACGGA TGCGCGATCT GACGGTTGGG
CGAACCCTGG TCGGGCCACA CCGAAGCGAT TTGATTGGCA CCTTTTTGGC CAAGGGGTTG
CCAGCAAAGG ATTGCTCCAC AGGAGAGCAA AAGGCGCTGT TGGTCTCCTT GATCCTCGCC
AATGCGCGCG CGCTGCAGGC ACAGGAAGGT GCGGCCCCGA TTCTGCTGCT GGACGAAGTG
GCGGCGCATC TGGATGCGGG GCGGCGGGCC GCGCTCTATG ACGAGATTTG CGCGTTGGGC
ACGCAGGCCT GGATGACGGG CACGGGACCT GAGCTGTTTC AAGAATTGGG CTCCCGCGCG
CAACATTTGA CCGTGAGCGA TCGGGGCGGG ACAAGCGAGG TTACACTGCA ATGA
|
|---|
| Protein sequence | MSHFRSHLRA DLHLDTRPVA IHGNNGAGKT NILEAVSLFS PGRGLRRASA ADMARQPEAL
GWKLRGVLQS SGQAYEVETS SEVGNARQVK IDNKSASQVA LGRIARVVWL VPAMDRLWIE
GAEGRRRFLD RIALSFDPDH AEASLSYEKA MRERNRLLKD NVRDAAWYRV LEGQMAETGF
RIHQARMDAV ARLTAAQAEA ETAFPVAQLQ LVQAEGDMPA SAEALREMLD AGRMRDLTVG
RTLVGPHRSD LIGTFLAKGL PAKDCSTGEQ KALLVSLILA NARALQAQEG AAPILLLDEV
AAHLDAGRRA ALYDEICALG TQAWMTGTGP ELFQELGSRA QHLTVSDRGG TSEVTLQ
|
|---|
| |