| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0002 |
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| Symbol | |
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| ID | 4078746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1739 |
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| End bp | 2860 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638005289 |
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| Product | DNA polymerase III subunit beta |
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| Protein accession | YP_611997 |
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| Protein GI | 99079843 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
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| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0966551 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.572668 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATCA GCATTGAACG CGCAACGCTT CTGAAGGCTG TGGCCCAGGC GCAGTCGGTG
GTTGAGCGCC GCAACACCAT TCCGATCCTC GCCAATGTCC TGATCGAGGC CGAAGGCAGT
GATGTGATGT TCCGCGCAAC CGACCTCGAT ATCGAGGTCG TCGACAAGGC GCCCGCACAG
GTGGAGCGTG CAGGCGCCAC CACCGTTGCG GCCACCACAT TGCATGAGAT CGTGCGCAAG
CTGCCCGACG GGGCACTGGT CACGCTCGAT GCCGACGCGG CCAGTGGTCG CCTCACTGTG
GAGGCTGGCC GGTCGAATTT TTCGCTGGCA ACGCTGCCGC GAGAAGATTT TCCGGTTATG
GCGACGTCGG AGTATCACTC CAACTTCACG GCAAATGCCG CCATGTTGCG GCGCCTGTTT
GACAAGTCAA AGTTTGCGAT CTCCACCGAA GAGACGCGCT ATTACCTGAA CGGTGTCTAT
ATGCATGTGG CCACCGGTGA AAGCGGTGGC AAGGCGCTGC GCTGTGTGGC AACCGACGGG
CACCGTCTTG CGCGTATTGA TGCGGATTTG CCGATGGGTG CCGAGGACAT GCCAGGCGTG
ATCGTGCCCC GCAAGACTGT GGGCGAGTTG CGCAAACTCC TCGACGAGGA CGACATGGAT
ATCGCTGTCT CTGTCTCAGA GACCAAAGTG CGCTTTGCCA CGCCCAATAT CACTCTGACA
TCCAAGGTGA TTGACGGGAC TTTCCCCGAT TACACCCGCG TTATTCCGGT CGGCAATACC
CGCCGTCTGG AGGTGGATGC CAGTGAGTTT GCGAAAGCTG TGGACCGGGT TGCCACGGTG
TCTTCAGAGC GGTCACGCGC GGTAAAGCTG CAACTTGATG AAGATCGGCT TGTGTTGTCG
GTGAATGCCC CTGACAGCGG TGCAGCCGAA GAAGAGCTGG CTGTTGCCTA TAGCGACGAG
CGGTTGGAAA TCGGGTTTAA CGCGAAATAT CTTCTGGAGA TTGCCAATCA GGTTGATCGA
GAGAATGCCG TGTTCATGTT CAACTCTTCT GGTGATCCGA CATTGATGCG CGAAGGCAGC
GACGAAAGCG CGGTCTATGT GGTCATGCCG ATGCGCGTCT GA
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| Protein sequence | MKISIERATL LKAVAQAQSV VERRNTIPIL ANVLIEAEGS DVMFRATDLD IEVVDKAPAQ
VERAGATTVA ATTLHEIVRK LPDGALVTLD ADAASGRLTV EAGRSNFSLA TLPREDFPVM
ATSEYHSNFT ANAAMLRRLF DKSKFAISTE ETRYYLNGVY MHVATGESGG KALRCVATDG
HRLARIDADL PMGAEDMPGV IVPRKTVGEL RKLLDEDDMD IAVSVSETKV RFATPNITLT
SKVIDGTFPD YTRVIPVGNT RRLEVDASEF AKAVDRVATV SSERSRAVKL QLDEDRLVLS
VNAPDSGAAE EELAVAYSDE RLEIGFNAKY LLEIANQVDR ENAVFMFNSS GDPTLMREGS
DESAVYVVMP MRV
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