| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3744 |
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| Symbol | |
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| ID | 4075451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 801317 |
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| End bp | 803035 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005264 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_611973 |
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| Protein GI | 99078715 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCGTAT CCTATCTCCG TTCTTTGACC TGCGCAGCCG CGCTTTTGCT GACCACCGGG
CCGATGGCGG TGGCGGATGG GCTGGCGGGC GCGTATCTCG CTGGACGGGC CGCGACCTAT
GAAAGCGACT TTGCCGCCTC CGCCAAATAT TACACGCGTG CACTGGTGCG CGATCCGCAG
AACATCACCC TGATGGAGAA CCTCGTTTAT GCGCAGCTTG CGCTTGGAGA GGTCGAATCC
GCGTTGCCGG TGGCAGAGCG GATGTGGCAG GCAGGTGTGA GCAGTCAGGT CGCCAATATC
GTCATGGCAG GCAATCTTGC ACTGCAGGAA AACTATGACG CCCTGCTTGC ACGCGATTCC
GAACAGTTTG AAATCAGCCC GCTGGTCGAC GGGCTGCTGG ATGCTTGGGC CTATATGGGC
AAAGGCGCGG TCTCGCAGGC ACTCGACCAG TTCGACGCCG TGGCACAACA GGACGGGCTG
CGCTTTTTTG CTTTGTACCA CAAGGCCTTG GCGCTTGCAT CGGTCGGAGA TTACGAGGGC
GCAGACCAAC TGTTTGCCGC CAATGAGGGC CAGCTAGGCA GGTCCTCGCG CCGGGCTGCA
ATCGCGCGGA TACAGGTCCT GTCACAACTC GGGCGCAACG ATCAGGCGCT TGAGGTGCTG
GTCGACAGCT TTGGCGAAGG CTTCGACCCT GCGCTTACGG AGTTTGCAGA TCAACTCGCC
ATGGGAGAGA CCTTACGGTT CTCGATTACC CCGACCGCAC GCGATGGCAT GGCAGAGGTG
TTCTACAGCC TTGGTCAGGC GCTTTCGGGC GAGGCAGCGA GTGACTATGT GCTGATGTAT
GCACGCATGG CCGCAAAACT CAGCCCCGGC CATGTGGATG CCGTGCTTCT GAGCGCGGGG
CTTCTGGATC AAATGGGTCG TTACGAACTG TCGATCGCCA CCTACAAGCA GGTGCCGCGT
GATCACCCTG ATTTCCATGC TGCCGAGCTT GGTCGTGCCG AGGCGCTGCG GCGATCGGCC
AATCCGCAGG CCGCCGCCGA AGTGCTGGAA CAACTGGCGC GCGATTTCCC GCAGCATGTC
GCGGTCTATA TCGATCTGGG CGACCTTATG CGGCAGCAGG AAAACTATGC CGAAGCCGCA
AAGGCCTATA CCCGCGCGCT CGAACTGAGC CCCGATGAGA CAACGAACCG CTGGTTCCTT
TATTATGCGC GCGGCATCTG TAACGAACGT CTGAAGAACT GGGAGGCGGC CGAGGCGGAT
TTTCGCGCCG CGCTTGAGAT CGACCCGGAC CAGCCCCAGG TTCTGAACTA CCTAGGCTAC
TCCCTTGTGG AGCGGCAGGA AAAACTGGAC GAGGCACTTT CCATGATCGA GCGTGCCGTC
GCTGCGCGCC CCGAGAGTGG CTATATCATC GACAGCCTTG GATGGGTTCT TTACCGGATG
GGCCGCTATG ACGAAGCCGT CGGTCACATG GAACGCGCAG TCGAGTTGAT GCCCGTGGAT
CCGGTGGTGA ACGATCACCT CGGAGATGTC TATTGGGCGG TTGGGCGCAA GCTGGAGGCC
GAGTTCCAGT GGCGGCGCGC GCTTTCCTTT GTGGAGCCCG AGGATAAGGA CGCCGAGGCC
AACCCGGATC GCATTCGCCG CAAGCTCGAC GTTGGGCTTG ATGTGGTCCT GGCCGAAGAA
GGGGCAGAAC CGCTTCAGGT TGCGAATGAC GATCACTGA
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| Protein sequence | MPVSYLRSLT CAAALLLTTG PMAVADGLAG AYLAGRAATY ESDFAASAKY YTRALVRDPQ
NITLMENLVY AQLALGEVES ALPVAERMWQ AGVSSQVANI VMAGNLALQE NYDALLARDS
EQFEISPLVD GLLDAWAYMG KGAVSQALDQ FDAVAQQDGL RFFALYHKAL ALASVGDYEG
ADQLFAANEG QLGRSSRRAA IARIQVLSQL GRNDQALEVL VDSFGEGFDP ALTEFADQLA
MGETLRFSIT PTARDGMAEV FYSLGQALSG EAASDYVLMY ARMAAKLSPG HVDAVLLSAG
LLDQMGRYEL SIATYKQVPR DHPDFHAAEL GRAEALRRSA NPQAAAEVLE QLARDFPQHV
AVYIDLGDLM RQQENYAEAA KAYTRALELS PDETTNRWFL YYARGICNER LKNWEAAEAD
FRAALEIDPD QPQVLNYLGY SLVERQEKLD EALSMIERAV AARPESGYII DSLGWVLYRM
GRYDEAVGHM ERAVELMPVD PVVNDHLGDV YWAVGRKLEA EFQWRRALSF VEPEDKDAEA
NPDRIRRKLD VGLDVVLAEE GAEPLQVAND DH
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