Gene TM1040_3708 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3708 
Symbol 
ID4075677 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp766961 
End bp767863 
Gene Length903 bp 
Protein Length300 aa 
Translation table11 
GC content60% 
IMG OID638005228 
Productphosphonate-binding periplasmic protein 
Protein accessionYP_611937 
Protein GI99078679 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component 
TIGRFAM ID[TIGR01098] phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein
[TIGR03431] phosphonate ABC transporter, periplasmic phosphonate binding protein 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.141446 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACACC TGATCCTTGC CGCACTGGCC TCCACCGCCC TGACCACCCC GGTCCTGGCA 
GACGACATCT CTGAATTCCG CATCGGTATC CTGGGCGGTG AGAACGCTCA GGACCGTCTG
AACTCCAACG AGTGCCTGCG CGCCAAAACC GAAGAGCTCT TGGGCGTTGA AACCAAACTC
TTTGCGCCTG CCGACTACAA CGGCGTGATC CAGGGTCTGC TGGGCGGCAC CATCGACATG
GCCTGGCTGG GCGCTTCCGG CTACGCAAAG ACCTATCTCT CCGACCCCGA AGCGGTTGAG
CCGGTTCTGG TCAAAGTAAA CGTCGATGGC GGCTACGGCT ACTACTCGGT TGGTTTTGCC
CGCAAGGACA GCAACATCAA CGCCCTTGAG GACGTCAAAG GCAAGGTCTT TGGCTTTGGT
GATCCGAACT CCACCTCCGG CTACCTGATC CCATCCATCG AGATCCCGCA GGCGACCGGT
TCCACCATGC AGTCCGGCGA CTACTTCGGT GAGGTGAAGT TCACCGGCGG TCACGAGCAG
ACCATCGTTG CGGTTGCAAA CGGCGACATC GACGCTGGTG TGACCTGGGC CGACGGCTTG
GGCAACTGGG AAGACGGCTA TAACTCCGGC GCGCTGCGCA AGGCCGTGGA CGCGGGACTC
GTCGACATGA ACGATCTGGT CCAGATCTGG CAGTCCAAGC CGATCCCCGA AGGCCCGGTT
GTTCTGCGCA AGGCGCTGCC CGAGGACGTC AAAGTGAAGA TGACCGCGCT TATGGCGTCG
ATGCCGGCAA TGGACTACGA CTGCTACTAC TCTGTTGCAG CGGGCGACTC CAAAGGCTTC
CAGCCGATCT CGCATGAGGC CTATGAGGTC ATCATCGAAG CGCGCAAGCT GAAGTCCAAC
TAA
 
Protein sequence
MKHLILAALA STALTTPVLA DDISEFRIGI LGGENAQDRL NSNECLRAKT EELLGVETKL 
FAPADYNGVI QGLLGGTIDM AWLGASGYAK TYLSDPEAVE PVLVKVNVDG GYGYYSVGFA
RKDSNINALE DVKGKVFGFG DPNSTSGYLI PSIEIPQATG STMQSGDYFG EVKFTGGHEQ
TIVAVANGDI DAGVTWADGL GNWEDGYNSG ALRKAVDAGL VDMNDLVQIW QSKPIPEGPV
VLRKALPEDV KVKMTALMAS MPAMDYDCYY SVAAGDSKGF QPISHEAYEV IIEARKLKSN