| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3689 |
|---|
| Symbol | |
|---|
| ID | 4075658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 750163 |
|---|
| End bp | 751407 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638005209 |
|---|
| Product | glycosyl transferase, group 1 |
|---|
| Protein accession | YP_611918 |
|---|
| Protein GI | 99078660 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.466266 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.187253 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGGAA AACGCCCCGC GCTTGCTGTG TTGGTCAAAG GCTGGCCGCG CCTTTCCGAG
ACCTTTATCG CGCAGGAACT TGTCGCTCTT GAGGCGGCGG GGCAGCCTTT TGAGATTTGG
TCGCTGCGTC ACCCCACCGA CACCAAAACT CACCCGCTTC ATGATCGCCT CCAGGCACCG
GTGCATTACC TGCCGGAGTA TCTCTATGAT GCGCCCGCTC GGGTGGCCGA GGCTCGCACT
CGGGCGCAGA CGCTGCCGGG CTACGCGGCG GCCTACGAAG TCTGGCGCGC TGATCTGCGC
CGCGACCCGA CGCACAACCG CATTCGCCGC TTTGGTCAGG CCTGTGTCCT GGCGGCGGAA
CTGCCGCCCG AGGTGCGCGG CCTTTATGCC CATTTCCTGC ATACGCCCGC TTCGGTGGCG
CGCTATGCCG CAATCATGCG GGGCCTGCCG TGGAGCTTTT CGGCCCATGC AAAAGACATC
TGGACCTCGC CCGAATGGGA GTTGCGCGAA AAGCTCTCGG CGGCCAGCCA TGGCGCGGCC
TTTGGGGCCA CCTGCACAGG GTTTGGCGCG AAGCATCTAC AAGAGCTCTC TGACGGCACG
CCTGTGGATC TGATCTATCA CGGGCTTGAT CTGTCGCGGT TCCCCGCCCC CCCTGCGCGT
GTACTGCGCA GCCCGAATGC GCCGTTTCAC ATGATGTCGG TGGGGCGGCT GGTGGAGAAG
AAAGGCTTTG ACCGCTTGAT CGCCGCGCTT GCGCTCCTGC CTCGGGATCT TGACTGGCAC
TGGACCCATA TCGGTGGTGG CGGACTTGGG GATCTGTTGC AGGGCATGGC CGAAGACGCA
GGCATTTCTG CTCGTATCAC ATGGCGCGGC GCCTGCGATC AGCCCGAGGT GATTGATGCG
ATGCGTGCGG CGGATCTCTT TGTGCTGCCT TCCCGTGTGG CTTCGGATGG CGACCGCGAC
GGCTTGCCCA ATGTGCTGAT GGAGGCGGCT TCGCAAGGCC TGCCGATCCT CTCGACCCCG
GTGTCGGCTA TTCCCGAGTT CATCGAAAGT GGCACCCATG GCCTCCTCAG CAGCGACGCG
CCCGAGGCTT TGGCGGACGC GATGCTGCGT TTGGCCCATG CGCCCGAAGA GGCGCAGCGC
ATGGCCAAAG CCGCGCTTCT GCGTCTGCGC GCTGAGTTTG GCATGGATCC GGGTATTGCG
CAGTTGAACA CGCGCCTCAA TGCGATGCTG AAGGACGCTG GATGA
|
|---|
| Protein sequence | MTGKRPALAV LVKGWPRLSE TFIAQELVAL EAAGQPFEIW SLRHPTDTKT HPLHDRLQAP
VHYLPEYLYD APARVAEART RAQTLPGYAA AYEVWRADLR RDPTHNRIRR FGQACVLAAE
LPPEVRGLYA HFLHTPASVA RYAAIMRGLP WSFSAHAKDI WTSPEWELRE KLSAASHGAA
FGATCTGFGA KHLQELSDGT PVDLIYHGLD LSRFPAPPAR VLRSPNAPFH MMSVGRLVEK
KGFDRLIAAL ALLPRDLDWH WTHIGGGGLG DLLQGMAEDA GISARITWRG ACDQPEVIDA
MRAADLFVLP SRVASDGDRD GLPNVLMEAA SQGLPILSTP VSAIPEFIES GTHGLLSSDA
PEALADAMLR LAHAPEEAQR MAKAALLRLR AEFGMDPGIA QLNTRLNAML KDAG
|
|---|
| |