| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3687 |
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| Symbol | |
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| ID | 4075656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 746168 |
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| End bp | 748522 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638005207 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_611916 |
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| Protein GI | 99078658 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.276928 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.239632 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAGAT TGACCGCTTT GCTCCGCCTG TGGCTGATCG CAGCTACGAT CGGCCTGCTT
GGCAGTGTGC CTGCTGATGC GCAATCGACG CTGGTGTCCC AGGGAACCTC CGAGGAAGCG
CGTTCTCAGA GCGATCTTGC TGATGCGATC CGACAGGCCG CAGAGGCAGG TGTGGGCGTC
GTGATCGTCG ACAGCAGCGG CCGCGCGCTC AGTGGTGCCG AAGTTGTGGC GCAGGCCGGG
TCCGCGATGG AAGAGGAACC GGGCGTCATG GGCGGCGCCT CATCAATGAT GAAGGCACAA
AGCGAGCTGC GCGATTTTCG CAGCAAGCTC AACGAACGGC TGAAGTCGCT CCCCAGCTCC
TATATCGAGA TGGCCTACAT CCTGCGCGCG ACCAGCCCCG ACGGCCGCAT CATCACTTAT
GTCAAAGTGG TGCTGATTAC GACCGTCCTG CTGTTGATCG GACGCTGGCT CTCGACCGAG
ATATACGGCA AGCGGCTTAT CAAAAGCTAT GTCGTGAGCC GTATCGAGGA AAAGCCCGAA
GGCTATGCCG GGAAGATGCC ATTCCTGTTC ATCCGGTTTG CTGCCGGTCT GGGCGGTACG
CTTTTTGCAA TGATCTTTGC GCTGATCGTG ACGCTGCTGG TGTTTGGCCC CTCGGGGGAT
GTCTCGATCG AGTTCACGTC GCTTGCGGTC TATCTAACGT TTTTTGTGGC ACGCACGATC
TCTGATCTGT GGCGCATGGT GCTCTCGCCC TACCTCAGCC AGTATCGCAT CCCGTCGCTT
TCGGACAGGG ATGCAAAGCG GCTCTACTTC TGGCTCTCGG GACTTGCGAC CTTTGATTTT
GTCGCCGTTA TGGTTTCGAC CTGGGTGCAG GATTTTGGTC TCAACTACAA TATCTATGCG
CTGACCTATT CGTTGCTGAT GCTGGCCTCT TCGCTGCTGG CAATCCTGCT CGTGCTGTTC
AACGCGCGGG CCATTTCCGG TGCGATCCGC CATGTGGGCG ATGCACACGT GGTGGCCTGG
CCAAACCGTC TGCTGTCGTG GGTCTGGGCA CCCATCGTAA TCCTCTACAT CGCCTTTGGC
TGGTTGGCTC TGACGTTTGA CCTCGTGCTT GAGAACCCAA GCGCGCTGCC GCCGAATATG
GGTCTCTTTG CGGTGCTGAC CTCGATCCTG GTGGTCTATG GTCTGATCAA CTACGTGATC
GAACAATTCA CCTCGCGCCG CCGGATCATC GAGACCACAG ATGACACGAC GCAAAGCGAC
GACGAAAACA GCGAAGACGC TCAAGAAAAG ACCACGGCGC GCCACCCGAT TGCGACCTAC
AAGGATCTGG CTCGTCGCGC AGCGGGCATC CTGGCCTTTC TCGTCGGTGC CGTTTCGCTG
ATATTCATCT GGAACCCCGA GTTTGCAATG GAGGATGCGC CCTGGCTCGA TCGGGCAATC
GATGTGCTGG TGATCCTCTT CATCGGATAT CTGGTTTTCC ATATCGCCCG GATCTGGATT
GACAGCAAAA TCGAAGAAGA AACGCAAGAT CAGCCGGATG GCGAGTTGGG CGACGAAGGC
GGGGGCAGCA GTGCCAGCCG CCTGGCCACG CTCCTGCCTC TGTTCCGTGG CGCAATTCTG
GCGGTGGTTG TGGTCACGAT CATTCTCATC GTGCTGATGG AGATCGGCAT CAATGTGAGC
CCGCTGTTTG CCGGTGCCGG TGTCGTGGGC CTGGCGGTTG GATTTGGCTC ACAGACCCTG
GTGCGCGATA TATTCTCGGG CGCGTTTTTC CTGATCGACG ATGCCTTTCG CCGGGGCGAA
TACATCGACA TCGGCAGTGT GAAGGGCACG GTCGAGAAGA TCTCCGTGCG GTCGTTTCAG
CTGCGCCATC ACCTTGGGGC GCTGCACACC ATTCCCTTTG GCGAAATCCA GGTGCTGACA
AACTATTCGC GCGACTGGGT GATCATGAAG CTGCCGCTGC GCGTGACCTA TGACACGGAT
GTCGAAAAGG TGCGCAAGCT GATCAAGACC CTCGGCAAGG AGTTGCTGAA CGATCCGGTA
ATCGGTCACA ACTTCATTCA GCCTCTGAAA TCGCAGGGCG TGATCGAGAT GCAGGATTCC
GCAATGATCA TCCGTGTGAA GTTCATGACC AAGCCCGGCG ATCAGTGGCT GGTGCGCAAG
AAGGTTTTTC AGGAAATCCG GGATCTCTTC GAACGCGAGG GTATCAAGTT TGCCCACCGC
GAGGTCACCG TGCGCGTTGT GGATGACACC GGCGAAAAAG TCCCCGAGGC TAAGCGCGAC
GCCGCCCTTG GCGCGGCGCA GGCGGCTATC GAGGATGATC TGATGGATTC GAACGACGGC
GGCGATGACC GCTGA
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| Protein sequence | MSRLTALLRL WLIAATIGLL GSVPADAQST LVSQGTSEEA RSQSDLADAI RQAAEAGVGV
VIVDSSGRAL SGAEVVAQAG SAMEEEPGVM GGASSMMKAQ SELRDFRSKL NERLKSLPSS
YIEMAYILRA TSPDGRIITY VKVVLITTVL LLIGRWLSTE IYGKRLIKSY VVSRIEEKPE
GYAGKMPFLF IRFAAGLGGT LFAMIFALIV TLLVFGPSGD VSIEFTSLAV YLTFFVARTI
SDLWRMVLSP YLSQYRIPSL SDRDAKRLYF WLSGLATFDF VAVMVSTWVQ DFGLNYNIYA
LTYSLLMLAS SLLAILLVLF NARAISGAIR HVGDAHVVAW PNRLLSWVWA PIVILYIAFG
WLALTFDLVL ENPSALPPNM GLFAVLTSIL VVYGLINYVI EQFTSRRRII ETTDDTTQSD
DENSEDAQEK TTARHPIATY KDLARRAAGI LAFLVGAVSL IFIWNPEFAM EDAPWLDRAI
DVLVILFIGY LVFHIARIWI DSKIEEETQD QPDGELGDEG GGSSASRLAT LLPLFRGAIL
AVVVVTIILI VLMEIGINVS PLFAGAGVVG LAVGFGSQTL VRDIFSGAFF LIDDAFRRGE
YIDIGSVKGT VEKISVRSFQ LRHHLGALHT IPFGEIQVLT NYSRDWVIMK LPLRVTYDTD
VEKVRKLIKT LGKELLNDPV IGHNFIQPLK SQGVIEMQDS AMIIRVKFMT KPGDQWLVRK
KVFQEIRDLF EREGIKFAHR EVTVRVVDDT GEKVPEAKRD AALGAAQAAI EDDLMDSNDG
GDDR
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