| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3683 |
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| Symbol | |
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| ID | 4075652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 740642 |
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| End bp | 742561 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638005203 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_611912 |
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| Protein GI | 99078654 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.378617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.495229 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAACG CCCGTCCCCT GCTTTCCTTC ACCAGTGCCC TTGCCTTTCT GCTGCTGCCG
CTTGCGACGG TTGCTCAACC CACCGTGCAA GAAAGCGCCT TCTGGAGCCA TGAGGTCAGC
GCAGGCGATC TGCCGCCCGC CGCTGAACGC ATCCCCGCAG AGCCGCTGGT GGTGAACCTC
GCCGCCAAGG GGCGCAGTCC GGGCATTCCC GGCGGCACGC TCAATACGAT GGTCACGCGC
TCCAAGGACA TCCGCCAGAT GGTTGTCTAC GGCTATGCGC GCCTTGTGGG ATACAACGAG
AACTACGAGC TCGTGCCCGA TGTGCTACAA AGCTTTGAAA GCGAGGGCGA TCGCAAATTC
ACCCTGCACC TCCGCGAGGG GCATAAATGG TCCTCTGGCG ATCCTTTCAC CTCGGCGGAT
TTTGAATACT GGTGGACACA CATTGCCAAC AACCGCGAGC TCAATCCCAC CGGCCCGCCG
GATTTTGTGC GCGTCGAGGG CGAGTTGCCG GAGGTCACTT TTCCGGATGA CACCACTGTG
GTTTTTGAGT GGAGCACCCC CAACCCCAGC TTCCTTCAGG TGCTGGCGCA GGCGGTGCCA
CCCTTCATCT ACCGTCCCTC CGCCTATCTG AAACAGTTCC ACAAGGACTT TGCCGACCCC
GAAGCCTTGG AAGAGGAAAT CGACTACGCC CGCGTCAAGA GCTGGGCCGC GCTGCACAAC
AAGCGCGACA ATATGGACAA GTTCGACAAT CCTGACCTGC CGACGCTACA GCCTTGGATC
AACGCCACCG CAGGCAAGAA GATCCGCCAT CAATTTGTGC GCAATCCGTA CTATCATCGC
ATCGATGAGA ACGGCGTGCA GCTCCCTTAT ATCGACACGG TCGAAATGGA GATTGTGTCG
GGCGGGTTGG TCGCGGCAAA ATCCAACGCG GGCGAGGCCG ACCTGCAGGC ACGTGGGCTT
GATTTCAGAG ACATTCCGAT CTTGCGCAAA GGCGAGGCAA ATGGTGACTA TCGCACCGAG
CTATGGTCCT CGGGCACTGC CTCGCAGATT GCGATTTATC CGAACCTGAA CGCGGCGGAT
GAAGTCTGGC GCGCGACCCT GCGCGATGTG CGTGTGCGCC GCGCCCTTTC GGTGGCGATC
AACCGAGCAG CCATCAATAA ATCGCTCTAT TTCAAGCTGG CAAAGCCCGG CGCGATGACG
GTTCTGGAGA AAAGCCCCTT CTTTGAGCAA GAGTTGCGGG ACGCGTGGGC CCAGTATGAT
CCCGATCTCG CCAACACGCT GCTGGATGAG GCAGGCCTCA CGGAACGTGA CGGCTACGGC
ATCCGCCGCC TGCCCGACGG GCGCCCGATG GAATTGGTGG TGGAAACCGC AGGCGAGCGG
CAAGAGGTAG AAAATGCGCT GCAGATCATC ACAGATGACT GGCGCGATGT GGGTGTAAAG
CTGGTGATGC GCCCGCTCGA TCGCGACATC CTGCGCAATC GTGTGTTCTC GGGCACCACC
ATGGCCTCGG TCTGGTACGG CTGGGACAAT GGCCTCCCAC AGAGCTACAC CTCCCCGGCC
TATCTTGCGC CCACGGATCA GGTGTTTTTG TCCTGGCCCA AATGGGGTCA GTATTATCAA
ACCAGCGGCG CGGTGGGCGA AGCGCCAGAT ATGGCACCGG CGCAGCGTCT GATGGAGCTT
CTGGACGACT GGAACAAGGC ACCAGATGCC AACAAACGGG CCGAAGCCTG GCATGAGATG
CTTGAAATTC ACGCCGAAAA TGTCTTTGCA ATTGGTCTGG TGGCAGCCGC GCCGCAGCCC
GTTGTGGTCT CAAACCGTCT GCGCAATGTG CCCAAGACGG CGATCTGGGC CTGGGATCCC
GGCGCACATT TTGGCGTGCA CCGGATGGAT GAGTTCTACT TTGAGGATGG CGAAGGCTGA
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| Protein sequence | MSNARPLLSF TSALAFLLLP LATVAQPTVQ ESAFWSHEVS AGDLPPAAER IPAEPLVVNL
AAKGRSPGIP GGTLNTMVTR SKDIRQMVVY GYARLVGYNE NYELVPDVLQ SFESEGDRKF
TLHLREGHKW SSGDPFTSAD FEYWWTHIAN NRELNPTGPP DFVRVEGELP EVTFPDDTTV
VFEWSTPNPS FLQVLAQAVP PFIYRPSAYL KQFHKDFADP EALEEEIDYA RVKSWAALHN
KRDNMDKFDN PDLPTLQPWI NATAGKKIRH QFVRNPYYHR IDENGVQLPY IDTVEMEIVS
GGLVAAKSNA GEADLQARGL DFRDIPILRK GEANGDYRTE LWSSGTASQI AIYPNLNAAD
EVWRATLRDV RVRRALSVAI NRAAINKSLY FKLAKPGAMT VLEKSPFFEQ ELRDAWAQYD
PDLANTLLDE AGLTERDGYG IRRLPDGRPM ELVVETAGER QEVENALQII TDDWRDVGVK
LVMRPLDRDI LRNRVFSGTT MASVWYGWDN GLPQSYTSPA YLAPTDQVFL SWPKWGQYYQ
TSGAVGEAPD MAPAQRLMEL LDDWNKAPDA NKRAEAWHEM LEIHAENVFA IGLVAAAPQP
VVVSNRLRNV PKTAIWAWDP GAHFGVHRMD EFYFEDGEG
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