Gene TM1040_3676 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3676 
Symbol 
ID4075645 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp729194 
End bp732325 
Gene Length3132 bp 
Protein Length1043 aa 
Translation table11 
GC content60% 
IMG OID638005196 
Productcyclic nucleotide-binding protein 
Protein accessionYP_611905 
Protein GI99078647 
COG category[T] Signal transduction mechanisms
[V] Defense mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.88824 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCATC ATTGCCTGAA GAGGACAAAC CGCGCTACCC ATGTCAAAAC CCTTCTGTCA 
TCGTTCGATG ACAGAGATCT CACCCTGACG CTCGAACCGC GGAGCCGCCC CATAGAACGC
TCGCTATTCC AATTCATCTG GAAATACTCC AAGCGCGACC AGTTGGTTTT GCTGGTTGTG
ACCGCTTGCC TGTTTCCCCT GCTTTATCTG ACCCTTGAGC TGCCCAAGCG CATCATCAAC
GACGCGATCG GGGCGCAGAG TTCGACCATC GAGGTACTGG GGCAGCAGGT CGATCAGCTG
ACCTATCTGT GGATCCTGTG CGGTGCTTTT CTTCTGGCCG TGCTCGCACA TGGGCTGACA
AAAATGCGGA TCAACACCAT GAAAGGTGTG TTGGCCGAAC GGATGCTGCG CCGATTTCGG
TATAGTCTGA TCGCGCGTGT TCTGCGTTTC CCGCAACCCT ATTTCGAGCG CACCAGCCAG
GGCGAGTTGG TCTCCATGAT CACCTCCGAA TCAGAGCCCA TGGGCGGATT GATGGGCGAT
GCGGTCAGTC AACCGGTGCT GCAAGCCGGG CAGATGCTCA CCATCCTCTA TTTTCTATTC
GCGCAGAATT TCTGGTTCGG CTTGGCTGCG GTGGCTCTGA TCCCCTTGCA GGGCTGGCTC
ATCCCGCTGC TGCAACGCCG GATCAACCTC CTCAATAAGA AACGCATCCA GCAAGTGCGG
GCGCTGGCAT CGGAAATCGG GGAAAGTGCG GCCGGGGCCT CGACGCTGCG GGTCAATGGG
GGCTGGCGCT ACCGGATGGC GCGGGTGACG GATCGGCTGG GGCGGCTCTA CGAGATCCGC
TTCGAGATCT ACCAGAAAAA ATTCTTCATG AAGTTCCTCA ACAACTTCAT CACCCAGCTG
ACACCGTTCT TTTTCTACGC GGTGGGCGGC TACTTGGTGC TGGAGGGCAA GGTCTCGCTC
GGGGCGCTGG TGGCAGCTCT TGCGGCCTAC AAGGATTTGG CGTCCCCGTG GAAGGAGTTG
CTCACCTACT ACAACCAGAC ACAGGATATG TCGCTGCGCT GGGAGGTGAT CCTGGAACGC
TTTGCGCCGC CGGACATGGT CGACGAGCGC CTGATGGAGG GCGAACCAGA GGAACTGCCG
CATCTGGACG GAGACATCGT GCTCAAGGAC GTGAGCGTGC GCGACGCCGA TGGCAACCTG
ATCCTCGAGG AACTCTCTGC CACCTTCCCC AAGGGCGAAT TGATCGGCAT CGCAGCCCCA
TCCGAGGAGG ATCGTCGCGC ATTGGCCGAA GTGCTGACGC GCGAGGTTTT GCCCGCGTCC
GGCACCGTCA CGCTGGCCGG ACATGACATT CGCGAGTTGC ACCAGATGGT GCTCGCAACC
CGTATCGGGC ATGCCACCTC GCGCCCGGCG CTCTTCAAAG GGTCCTTTGG TGAAAACGTT
CTGATGCCCC TGCGCGTGCG CCCGCTCGAA GATCCCAGCG ACGCACGGGC GGTGCGTGAT
GCAATCCGTG CAGGCAACAG CCCTGATCCC TTTGGGGTGA ACTGGGTCGA CCCCAAAATC
GCCGGGTTCG AAAAACCCGA GGAGCTGCGG GACTGGTGGC TGCGCATCGT CGAGGGGATC
GGATCCGATA CCGCCTTGCT GCGCCGTGGC ATGGATCAGG TCTTTGACCG GGAGGAACAC
CCCAAGCTGG CGCAAGCGCT GATCGATCTG CGCCCTCGTG TGCAACGTGC GCTGATGGAC
GCAGGACTGG ATGCTTTTGC GCGTTTCAAC AATCCCGCGC ATTACAATCC CGCGCTGCCG
GTGGTGGAAA ACCTCCTCTA TGCCACCCGA TCCGTGCCCA TCACCTATGA ACTGCTGCGC
GAGCAGACAG AATTCCTGCA GACCCTGCGG CGCATCGGGC TCGACAAGGA CTTGGTGGCG
CTAGCACAGG ATGTGCTCGA GATGCTGCGC CAGATCTTTG GCATGGATGG CACCGTCCAC
CCGTTGTTCC GCAAACTGGG GCTTGAGGCC AGCGATTACG AGGCCGCGCT ACAACTTCTG
CAGAAGGTGA AATCCAGAGG GACCGAAGCT TTGGAGCCTG AAGAACTCGC GCAGATGATG
ATCGTGCCAT TCTCGATCTC TGCCGAAGCC CTTGGTCCGG CATTCAGCTC CGAAATCGAA
AACCGGATCC TGAGCTTGCG CGACAGCCAC GGACGAGAGC TTCTTGAGAC GCTGGATGAC
CTCTTTGTAC CGCTCAACAA GGATCGTTTT GCCCCCGGCT TCACCGTGCT TGAGAATGCA
ATCTTCGGTA AGATCTCTGA CAACGCAGGG GCGCGGGCGG AGGATCTGCG CAAGACCGTG
GCCGAAGTCA TCGACGCGGC CGGTGTGCGC GAAATGGTGG TGGAGCTCAT CTTTGATCTG
CCGGTATCGG TGGGCGGGCA GGGGCTCGGG CAGAGTTTTG CGGAACCGCT GGCCTTCTGC
CGTGCGTCGA TCAAACGTCC TGACATCCTG ATCCTAGATG GCGCGCTGGC GAGTTTTGAC
CGCGCCACGC GACGCGCCAT GCAGGACAAT CTGCGGGACC TCCTGCCGCA ATCGACACTG
ATTTTCCTTG AGCCTGCGTT CAAGGACCCG GACCGCTTTG ATCATTATTT CGAGATGCGC
CAGGGCCGGC TGAAAGATGA GCGCGCGGCC GAGCGGGGAG CCGCAGACGA AGACAGCGCC
TCTGCTGCGG ATCTGTCGCG CAAATTGCGG GCACTGGAGA GCACGGAGCT TTTCTCCGGG
CTCAACCGCC GTCAGCTGCG CCTTCTTGCC TTTAGTGCGC GCTGGTATGA GGCCACGCCG
GGCACCGCCG TCTTCCATAA GGATGATGCT GCCACCGACG GGGCGTATAT GATCATCGAA
GGCGAGGCAG GGCTCTACCT CCCCGCGGAA GATCCCGGTA CCAAGAGCCA GTTGATCGCC
AAAGTCGGAC CCGGACGTCT GGTAGGCGAA CTGGGGCTGA TCCGTAAAGA ACCGCGTGCG
TTGTCGATGA TCGCCGAGAG CGATCTCACC TGTCTTCGCA TCGGTGAAGA AGAGTTCCTC
GCGGTGGTGG AGAACGACGC CAACACCGCC TTCAAATTGC TACAGGTTGT GGCGGGCTAC
GTCTCCAGCT AG
 
Protein sequence
MLHHCLKRTN RATHVKTLLS SFDDRDLTLT LEPRSRPIER SLFQFIWKYS KRDQLVLLVV 
TACLFPLLYL TLELPKRIIN DAIGAQSSTI EVLGQQVDQL TYLWILCGAF LLAVLAHGLT
KMRINTMKGV LAERMLRRFR YSLIARVLRF PQPYFERTSQ GELVSMITSE SEPMGGLMGD
AVSQPVLQAG QMLTILYFLF AQNFWFGLAA VALIPLQGWL IPLLQRRINL LNKKRIQQVR
ALASEIGESA AGASTLRVNG GWRYRMARVT DRLGRLYEIR FEIYQKKFFM KFLNNFITQL
TPFFFYAVGG YLVLEGKVSL GALVAALAAY KDLASPWKEL LTYYNQTQDM SLRWEVILER
FAPPDMVDER LMEGEPEELP HLDGDIVLKD VSVRDADGNL ILEELSATFP KGELIGIAAP
SEEDRRALAE VLTREVLPAS GTVTLAGHDI RELHQMVLAT RIGHATSRPA LFKGSFGENV
LMPLRVRPLE DPSDARAVRD AIRAGNSPDP FGVNWVDPKI AGFEKPEELR DWWLRIVEGI
GSDTALLRRG MDQVFDREEH PKLAQALIDL RPRVQRALMD AGLDAFARFN NPAHYNPALP
VVENLLYATR SVPITYELLR EQTEFLQTLR RIGLDKDLVA LAQDVLEMLR QIFGMDGTVH
PLFRKLGLEA SDYEAALQLL QKVKSRGTEA LEPEELAQMM IVPFSISAEA LGPAFSSEIE
NRILSLRDSH GRELLETLDD LFVPLNKDRF APGFTVLENA IFGKISDNAG ARAEDLRKTV
AEVIDAAGVR EMVVELIFDL PVSVGGQGLG QSFAEPLAFC RASIKRPDIL ILDGALASFD
RATRRAMQDN LRDLLPQSTL IFLEPAFKDP DRFDHYFEMR QGRLKDERAA ERGAADEDSA
SAADLSRKLR ALESTELFSG LNRRQLRLLA FSARWYEATP GTAVFHKDDA ATDGAYMIIE
GEAGLYLPAE DPGTKSQLIA KVGPGRLVGE LGLIRKEPRA LSMIAESDLT CLRIGEEEFL
AVVENDANTA FKLLQVVAGY VSS