Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3676 |
Symbol | |
ID | 4075645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | - |
Start bp | 729194 |
End bp | 732325 |
Gene Length | 3132 bp |
Protein Length | 1043 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638005196 |
Product | cyclic nucleotide-binding protein |
Protein accession | YP_611905 |
Protein GI | 99078647 |
COG category | [T] Signal transduction mechanisms [V] Defense mechanisms |
COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.88824 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCATC ATTGCCTGAA GAGGACAAAC CGCGCTACCC ATGTCAAAAC CCTTCTGTCA TCGTTCGATG ACAGAGATCT CACCCTGACG CTCGAACCGC GGAGCCGCCC CATAGAACGC TCGCTATTCC AATTCATCTG GAAATACTCC AAGCGCGACC AGTTGGTTTT GCTGGTTGTG ACCGCTTGCC TGTTTCCCCT GCTTTATCTG ACCCTTGAGC TGCCCAAGCG CATCATCAAC GACGCGATCG GGGCGCAGAG TTCGACCATC GAGGTACTGG GGCAGCAGGT CGATCAGCTG ACCTATCTGT GGATCCTGTG CGGTGCTTTT CTTCTGGCCG TGCTCGCACA TGGGCTGACA AAAATGCGGA TCAACACCAT GAAAGGTGTG TTGGCCGAAC GGATGCTGCG CCGATTTCGG TATAGTCTGA TCGCGCGTGT TCTGCGTTTC CCGCAACCCT ATTTCGAGCG CACCAGCCAG GGCGAGTTGG TCTCCATGAT CACCTCCGAA TCAGAGCCCA TGGGCGGATT GATGGGCGAT GCGGTCAGTC AACCGGTGCT GCAAGCCGGG CAGATGCTCA CCATCCTCTA TTTTCTATTC GCGCAGAATT TCTGGTTCGG CTTGGCTGCG GTGGCTCTGA TCCCCTTGCA GGGCTGGCTC ATCCCGCTGC TGCAACGCCG GATCAACCTC CTCAATAAGA AACGCATCCA GCAAGTGCGG GCGCTGGCAT CGGAAATCGG GGAAAGTGCG GCCGGGGCCT CGACGCTGCG GGTCAATGGG GGCTGGCGCT ACCGGATGGC GCGGGTGACG GATCGGCTGG GGCGGCTCTA CGAGATCCGC TTCGAGATCT ACCAGAAAAA ATTCTTCATG AAGTTCCTCA ACAACTTCAT CACCCAGCTG ACACCGTTCT TTTTCTACGC GGTGGGCGGC TACTTGGTGC TGGAGGGCAA GGTCTCGCTC GGGGCGCTGG TGGCAGCTCT TGCGGCCTAC AAGGATTTGG CGTCCCCGTG GAAGGAGTTG CTCACCTACT ACAACCAGAC ACAGGATATG TCGCTGCGCT GGGAGGTGAT CCTGGAACGC TTTGCGCCGC CGGACATGGT CGACGAGCGC CTGATGGAGG GCGAACCAGA GGAACTGCCG CATCTGGACG GAGACATCGT GCTCAAGGAC GTGAGCGTGC GCGACGCCGA TGGCAACCTG ATCCTCGAGG AACTCTCTGC CACCTTCCCC AAGGGCGAAT TGATCGGCAT CGCAGCCCCA TCCGAGGAGG ATCGTCGCGC ATTGGCCGAA GTGCTGACGC GCGAGGTTTT GCCCGCGTCC GGCACCGTCA CGCTGGCCGG ACATGACATT CGCGAGTTGC ACCAGATGGT GCTCGCAACC CGTATCGGGC ATGCCACCTC GCGCCCGGCG CTCTTCAAAG GGTCCTTTGG TGAAAACGTT CTGATGCCCC TGCGCGTGCG CCCGCTCGAA GATCCCAGCG ACGCACGGGC GGTGCGTGAT GCAATCCGTG CAGGCAACAG CCCTGATCCC TTTGGGGTGA ACTGGGTCGA CCCCAAAATC GCCGGGTTCG AAAAACCCGA GGAGCTGCGG GACTGGTGGC TGCGCATCGT CGAGGGGATC GGATCCGATA CCGCCTTGCT GCGCCGTGGC ATGGATCAGG TCTTTGACCG GGAGGAACAC CCCAAGCTGG CGCAAGCGCT GATCGATCTG CGCCCTCGTG TGCAACGTGC GCTGATGGAC GCAGGACTGG ATGCTTTTGC GCGTTTCAAC AATCCCGCGC ATTACAATCC CGCGCTGCCG GTGGTGGAAA ACCTCCTCTA TGCCACCCGA TCCGTGCCCA TCACCTATGA ACTGCTGCGC GAGCAGACAG AATTCCTGCA GACCCTGCGG CGCATCGGGC TCGACAAGGA CTTGGTGGCG CTAGCACAGG ATGTGCTCGA GATGCTGCGC CAGATCTTTG GCATGGATGG CACCGTCCAC CCGTTGTTCC GCAAACTGGG GCTTGAGGCC AGCGATTACG AGGCCGCGCT ACAACTTCTG CAGAAGGTGA AATCCAGAGG GACCGAAGCT TTGGAGCCTG AAGAACTCGC GCAGATGATG ATCGTGCCAT TCTCGATCTC TGCCGAAGCC CTTGGTCCGG CATTCAGCTC CGAAATCGAA AACCGGATCC TGAGCTTGCG CGACAGCCAC GGACGAGAGC TTCTTGAGAC GCTGGATGAC CTCTTTGTAC CGCTCAACAA GGATCGTTTT GCCCCCGGCT TCACCGTGCT TGAGAATGCA ATCTTCGGTA AGATCTCTGA CAACGCAGGG GCGCGGGCGG AGGATCTGCG CAAGACCGTG GCCGAAGTCA TCGACGCGGC CGGTGTGCGC GAAATGGTGG TGGAGCTCAT CTTTGATCTG CCGGTATCGG TGGGCGGGCA GGGGCTCGGG CAGAGTTTTG CGGAACCGCT GGCCTTCTGC CGTGCGTCGA TCAAACGTCC TGACATCCTG ATCCTAGATG GCGCGCTGGC GAGTTTTGAC CGCGCCACGC GACGCGCCAT GCAGGACAAT CTGCGGGACC TCCTGCCGCA ATCGACACTG ATTTTCCTTG AGCCTGCGTT CAAGGACCCG GACCGCTTTG ATCATTATTT CGAGATGCGC CAGGGCCGGC TGAAAGATGA GCGCGCGGCC GAGCGGGGAG CCGCAGACGA AGACAGCGCC TCTGCTGCGG ATCTGTCGCG CAAATTGCGG GCACTGGAGA GCACGGAGCT TTTCTCCGGG CTCAACCGCC GTCAGCTGCG CCTTCTTGCC TTTAGTGCGC GCTGGTATGA GGCCACGCCG GGCACCGCCG TCTTCCATAA GGATGATGCT GCCACCGACG GGGCGTATAT GATCATCGAA GGCGAGGCAG GGCTCTACCT CCCCGCGGAA GATCCCGGTA CCAAGAGCCA GTTGATCGCC AAAGTCGGAC CCGGACGTCT GGTAGGCGAA CTGGGGCTGA TCCGTAAAGA ACCGCGTGCG TTGTCGATGA TCGCCGAGAG CGATCTCACC TGTCTTCGCA TCGGTGAAGA AGAGTTCCTC GCGGTGGTGG AGAACGACGC CAACACCGCC TTCAAATTGC TACAGGTTGT GGCGGGCTAC GTCTCCAGCT AG
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Protein sequence | MLHHCLKRTN RATHVKTLLS SFDDRDLTLT LEPRSRPIER SLFQFIWKYS KRDQLVLLVV TACLFPLLYL TLELPKRIIN DAIGAQSSTI EVLGQQVDQL TYLWILCGAF LLAVLAHGLT KMRINTMKGV LAERMLRRFR YSLIARVLRF PQPYFERTSQ GELVSMITSE SEPMGGLMGD AVSQPVLQAG QMLTILYFLF AQNFWFGLAA VALIPLQGWL IPLLQRRINL LNKKRIQQVR ALASEIGESA AGASTLRVNG GWRYRMARVT DRLGRLYEIR FEIYQKKFFM KFLNNFITQL TPFFFYAVGG YLVLEGKVSL GALVAALAAY KDLASPWKEL LTYYNQTQDM SLRWEVILER FAPPDMVDER LMEGEPEELP HLDGDIVLKD VSVRDADGNL ILEELSATFP KGELIGIAAP SEEDRRALAE VLTREVLPAS GTVTLAGHDI RELHQMVLAT RIGHATSRPA LFKGSFGENV LMPLRVRPLE DPSDARAVRD AIRAGNSPDP FGVNWVDPKI AGFEKPEELR DWWLRIVEGI GSDTALLRRG MDQVFDREEH PKLAQALIDL RPRVQRALMD AGLDAFARFN NPAHYNPALP VVENLLYATR SVPITYELLR EQTEFLQTLR RIGLDKDLVA LAQDVLEMLR QIFGMDGTVH PLFRKLGLEA SDYEAALQLL QKVKSRGTEA LEPEELAQMM IVPFSISAEA LGPAFSSEIE NRILSLRDSH GRELLETLDD LFVPLNKDRF APGFTVLENA IFGKISDNAG ARAEDLRKTV AEVIDAAGVR EMVVELIFDL PVSVGGQGLG QSFAEPLAFC RASIKRPDIL ILDGALASFD RATRRAMQDN LRDLLPQSTL IFLEPAFKDP DRFDHYFEMR QGRLKDERAA ERGAADEDSA SAADLSRKLR ALESTELFSG LNRRQLRLLA FSARWYEATP GTAVFHKDDA ATDGAYMIIE GEAGLYLPAE DPGTKSQLIA KVGPGRLVGE LGLIRKEPRA LSMIAESDLT CLRIGEEEFL AVVENDANTA FKLLQVVAGY VSS
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