| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3639 |
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| Symbol | |
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| ID | 4075067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 696015 |
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| End bp | 697565 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005159 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_611868 |
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| Protein GI | 99078610 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.633734 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.269363 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCCT CCCTCGACCT GATCATGTTT GCCGCCTTGA TGGCGGCCAT CCTCATGGGA
TTTCCGGTCG CCTTCTCGAT TGCGGGCATC GCTGTGTTTT TTGCCTATCT GGGCTGGATG
CTGGGGGTGA TGGATATTTC GCTCCTTGGC GCCTTTGGCC AGCGGGTGTT TGGACTTCTG
AGCAATGAGG TGCTGATCGC CATTCCGCTG TTTGTGCTGA TGGGTGCAAT CCTCGAAAAG
AGCCGTATCG CAGAAGAGCT TCTGGACACG ATGGGGCGTC TTTTTGGGCA GCTCAAAGGC
GGTCTCGGAA TTTCCGTTGT ATTGGTTGGA GCGCTTCTGG CGGCGTCCAC CGGCATTGTG
GGCGCAACCG TTGTCGCAAT GGGCATGATC GCGCTGCCGG CGATGCTGCG GGCTGGTTAT
GACCCAAGAG TCGCCTCGGG CATCGTCTGC ACGGCGGGCA CGCTGGGACA GATCATTCCA
CCCTCGACGC TGCTGATCAT CCTCGCCGAT GTTATGTCCA ACGCCTATCA ACAGGTCCAA
TACGAACAGG GAAAGTTCGC TGTCGAAGCC TTGTCAGTGG GCCAATTCTT TGCCGCGGCC
CTGATCCCAG GGCTTGTACT GGTGGTACTT TATCTTCTGT ATATCCTGAT CCGGGGCCTT
CTGCGCCCCG AGGACATGCC TTCGGCTCCG GCTGGCATTG CGCGACCTCA TCGCACCGAA
GTGTTGCGGG CGGTGGTGCC CCCGATCCTT TTGATCTTTG CCGTGCTGGG CGCGATCCTT
GGTGGCGTTG CCACCCCGAC CGAGGCCGCC TCGGTCGGAG CCATCGGCGC GTTGTTGATG
GCCGGTCTCA GGACCGGAGG CCCGCTTCGC AGCATCTTGC TTGGCGCGGG CGCGCTGATT
GCTCTCGGCA TCTTGTCGGG CCTGCACCCC GTCCGCCTGC AGCGCAACGA TCTGAGCAGC
ATGGATCTGG TGATAGGCTT GTTTTATGCG CTGCTCGCAG CTGCCGGCGC CATTGCGGTG
CTCCTGTCTC TGCGCGCGGG TCTGAAGAAG CGCATCCTGC ATGATGCGGT CACCTCTACG
GCCACCATGA CCTCGATGAT CTTTGCCACC ATGCTCGCAG CGAGCATGTT CTCTCTTGTT
TTCATTGGCC TTGGAGGAGA GGACCGCGTT GCGCATATCC TGAGCGAGTT ACCCGGCGGT
CCCTCTGGGG CGCTCTTGTT CTCCATGTTG TTTATATTTG TGCTGGGATT CTTTCTCGAC
TTTGTCGAGA TCTCCGTAAT CGTCTTGCCA CTGGTGACGC CAACCTTGAT CCTGATGGGA
CATGATCCGG TCTGGCTCGG GATCTTGATC GCGATCAACC TTCAGACGTC CTTCCTGACA
CCACCCTTCG GCTTTTCGCT GTTTTACCTG CGAGGAGCCG CCCCAAAGGA GATCACAACG
CGCCATATCT ATCAGGGCGT CATCCCCTTC ATAGGTTTGC AGGTGCTTGG AGTGATCCTG
GTCTGGTTCA TCCCCGGTCT GGCCACATGG CTTCCCGAGG CCATCTTCTG A
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| Protein sequence | MTSSLDLIMF AALMAAILMG FPVAFSIAGI AVFFAYLGWM LGVMDISLLG AFGQRVFGLL
SNEVLIAIPL FVLMGAILEK SRIAEELLDT MGRLFGQLKG GLGISVVLVG ALLAASTGIV
GATVVAMGMI ALPAMLRAGY DPRVASGIVC TAGTLGQIIP PSTLLIILAD VMSNAYQQVQ
YEQGKFAVEA LSVGQFFAAA LIPGLVLVVL YLLYILIRGL LRPEDMPSAP AGIARPHRTE
VLRAVVPPIL LIFAVLGAIL GGVATPTEAA SVGAIGALLM AGLRTGGPLR SILLGAGALI
ALGILSGLHP VRLQRNDLSS MDLVIGLFYA LLAAAGAIAV LLSLRAGLKK RILHDAVTST
ATMTSMIFAT MLAASMFSLV FIGLGGEDRV AHILSELPGG PSGALLFSML FIFVLGFFLD
FVEISVIVLP LVTPTLILMG HDPVWLGILI AINLQTSFLT PPFGFSLFYL RGAAPKEITT
RHIYQGVIPF IGLQVLGVIL VWFIPGLATW LPEAIF
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