| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3635 |
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| Symbol | |
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| ID | 4075063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 691965 |
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| End bp | 693041 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638005155 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_611864 |
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| Protein GI | 99078606 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.248377 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGATA AGCTTGCGCA ATTCAGCCGT ATCGCGGTGG TCACAACCGC GATGGCAACA
CTACCGATGA TGGCAGGGGC GGAAACGCTG CGCCTTCTGA CTTGGGGCGG CTACGCGCCC
GAAGACGTCA TTGCGAAATT CGAAGAAGAA ACCGGCCACA CAGTCGAAGT GACCACCTCG
AACAACGAAG AGATGATCGC AAAGTTGCGC GCCACCAATG GCGGCGGTTT TGATCTGGCC
CAGCCGAGCC AGGACCGCAT CACCAGCGCG CAGGAAGAGT TCGGCATCTA CAAGCCGATC
GATATGTCCC GCATCAATGC GGATCTGTTC ATTCCGTCGA TGCTGAGCGC GACCGCTGCA
AACACGACCT TTGAGGGTGA AGTCTACGGC GTACCGCATG TCTGGGGCAC CAGCGGTCTT
GTGGTGAATA CCGAGATGGC AGGCAATGTG CAGGACTACA GTGATCTTTG CGACGACTCG
GTTGCAGGCA AGGTTTCTTA TCGTTTGAAG CGCCCGACTC TGATTGGTTT CGCCTATTCC
ATGGGTCTGG ACCCGTTTGC GGCCTATGGC GATAGCGCTG CTTATCAGGG GATCCTCGAT
CAGGTCGAAG CGAAACTCAC CGAGTGTAAA GCCAACGTCA AAACCTATTG GGATGGTGGC
GACGAGATCA AAAACCTGCT GCGCTCCGGC GAAGTTGTGG CGTCCATGGC CTGGGATACC
GGTGGCTGGC AGCTCAACGC TGACAACCCC GATATCACCT TTGTTGCACC AAAGTCCGGT
GCGCTGGGTT GGATCGACAC CTTTGTTCTG CCTGCCCGTG GCCGTGCAGA TGATGCGGCC
TATGACTGGA TCAACTTTGT GATGCGCCCG GAAATCGCGG CGATGATCAC CAACACCGCC
GGGAACTTCA CTGCAGCGGT TGATGGTGAT GCAGCTGTCG ATGCGGACCT CAAAGCGCGC
TACCAGAGCA GCTTTGACCA GCAGGCGATC GACAACATCA AGTGGTATCC CCCGGTGCCC
GCAGGTCTCG AAGCGATGGA AGGGGCAAGC CTCGACCGGA TCAACGCGGC CAACTAA
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| Protein sequence | MTDKLAQFSR IAVVTTAMAT LPMMAGAETL RLLTWGGYAP EDVIAKFEEE TGHTVEVTTS
NNEEMIAKLR ATNGGGFDLA QPSQDRITSA QEEFGIYKPI DMSRINADLF IPSMLSATAA
NTTFEGEVYG VPHVWGTSGL VVNTEMAGNV QDYSDLCDDS VAGKVSYRLK RPTLIGFAYS
MGLDPFAAYG DSAAYQGILD QVEAKLTECK ANVKTYWDGG DEIKNLLRSG EVVASMAWDT
GGWQLNADNP DITFVAPKSG ALGWIDTFVL PARGRADDAA YDWINFVMRP EIAAMITNTA
GNFTAAVDGD AAVDADLKAR YQSSFDQQAI DNIKWYPPVP AGLEAMEGAS LDRINAAN
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