| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3627 |
|---|
| Symbol | |
|---|
| ID | 4075054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 684940 |
|---|
| End bp | 685746 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638005146 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_611856 |
|---|
| Protein GI | 99078598 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.143912 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGACA TTATCGAACA AGCTGGCGCC TATTGGCCGC TCGTCGTCAG CGGTGCAAAA
GCGCTGGTGG TGCTGGTGCT TGGTTGGATC GCGGCCGGTA TGATTTCCGG CGCGGTACGC
AATCGCATCA ACAAAACGCC ACAAATTGAC GAAACTCTCG GCAGTTTCGT GTCAAGCGTC
GTACGCTGGG TTCTCTTGGC AATTGTATTG GTCGCAGTGC TCGGCGTCTT TGGCATCGAA
GCCACCAGCC TTGTTGCCAT GCTTGGCGCT GCGACCCTGG CTATCGGCCT CGCGCTGCAA
GGCACGCTGA GCGACCTGGC AGCCGGCTTT ATGCTAATCC TGTTTCGCCC CTACAAACTG
GGCCAGTTCG TCGATATTGG CGGCACGTCG GGCACGGTGA AGGATCTCAA CCTCTTTGTG
ACCGAACTCG TTACGCCTGA CAATGTGCAG ATTATCGTCC CCAATGGTCA GGCCTGGGGT
GCCATTATCA CCAACTACTC GGCCCATGAC ACTCGCCGCC TCGACATCAC CTATGGCATC
GACTACGGCG ACGACATCGA AAAGGCCAAA GCCATCATCC TGCGTCTTGC CGAAGCAGAT
GGTCGCGTTC TGACCAGCCC GGAGCCCTGG GTACGTGTCA CCAATTTGGG CGATAGCTCT
GTCGACATCT CCACACGCCT TTGGTGTGAT GCAGGTGACT ACTGGGAGCT GAAATGGACG
ATGATTCAGG GTGTGAAAGA GGCCTTTGAC GCCGACGGGA TCTCCATTCC TTATCCGCAT
AGCGTGGAAA TCCAGAAACA AGCGTGA
|
|---|
| Protein sequence | MEDIIEQAGA YWPLVVSGAK ALVVLVLGWI AAGMISGAVR NRINKTPQID ETLGSFVSSV
VRWVLLAIVL VAVLGVFGIE ATSLVAMLGA ATLAIGLALQ GTLSDLAAGF MLILFRPYKL
GQFVDIGGTS GTVKDLNLFV TELVTPDNVQ IIVPNGQAWG AIITNYSAHD TRRLDITYGI
DYGDDIEKAK AIILRLAEAD GRVLTSPEPW VRVTNLGDSS VDISTRLWCD AGDYWELKWT
MIQGVKEAFD ADGISIPYPH SVEIQKQA
|
|---|
| |