| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3618 |
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| Symbol | |
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| ID | 4075045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 672806 |
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| End bp | 675547 |
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| Gene Length | 2742 bp |
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| Protein Length | 913 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638005137 |
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| Product | methionine synthase (B12-dependent) |
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| Protein accession | YP_611847 |
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| Protein GI | 99078589 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.279732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0036931 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTGAAC CACTGCTGCG TCTCTCCGGC CTCGAGCCCT TTGTGCTTAC CAAGGACATT
CCCTTTGTGA ACGTAGGGGA GCGGACCAAT GTCACCGGAT CTGCCAGGTT TCGGAAGCTG
ATCACCAATC GCGACTATGC CACCGCACTG GACGTTGCCC GCGACCAGGT CGAAAACGGC
GCCCAGATTA TCGACATCAA CATGGATGAG GGTCTTATCG ACTCCAAGCA GGCGATGATC
GACTTTCTGA ACCTCGTGGC CGCTGAACCC GACATCGCGC GGGTGCCGAT CATGATCGAC
AGCTCGAAAT GGGAGGTGAT CGAAGCAGGT CTGCAATGTG TGCAGGGCAA ACCGATCGTG
AACTCCATCT CGCTCAAGGA AGGCGAGGAG AGTTTCCTGC ATCAGGCAAG CCTCTGCCTT
GCGTATGGCG CGGCCGTGGT GGTGATGGCC TTTGACGAGC AGGGGCAGGC CGACAGTTTC
GAGCGCAAGA TCGAGATCTG CGCGCGCGCC TACAAGATCC TCACCGAGCA GGTGGGTTTC
CCACCCGAAG ACATCATCTT TGATCCCAAT GTGTTTGCGG TGGCAACCGG GATTGAGGAA
CATGACAATT ATGGCGTCGA TTTTATCGAG GCGACGCGGT GGATCAGGGA AAATCTGCCG
CACTGTCATG TCTCGGGCGG GGTGTCGAAC CTGTCGTTCA GTTTCCGCGG GAACGAGCCA
GTACGCGAAG CGATGCATGC GGTGTTCCTT TATCACGCCA TCAAGGTTGG CATGGATATG
GGGATCGTCA ACGCAGGCCA ACTGGCGGTC TATGATCAGA TCGACCCGGA ACTGCGGGAG
GCCTGCGAAG ATGTTGTTCT GAACCGCACC CCCAAAGCCG GCGGCTCCGC GACCGAGAAC
CTTCTGGATA TTGCAGAGCG CTTTAAGGGT GGCACACGGG AAGAGAAGAA ACGTGACCTG
ACATGGCGCC AATGGCCGGT CGAAAAGCGG CTTGAACATG CTCTGGTCAA CGGGATCACG
GAATTCGTCG AGGAAGACAC TGAAGAGGCC CGCCAAGCGG CTGAGCGCCC TCTTCATGTA
ATCGAAGGCC CGCTTATGGA CGGGATGAAC GTGGTGGGCG ATCTCTTTGG GGCGGGTAAG
ATGTTTCTGC CGCAAGTGGT CAAATCCGCC CGCGTCATGA AACAGGCCGT GGCCGTACTT
CTTCCGTATA TGGAAGAAGA AAAACGTCAA AACGGTGGTG GTGGCAAGGA CACCGCGGGC
ACTGTCCTGA TGGCAACGGT CAAAGGTGAC GTACACGACA TCGGCAAGAA TATCGTTGGT
GTGGTTTTGG CCTGTAACAA CTTCGAGATC ATCGATCTTG GGGTGATGGT GCCGCCACAA
AAGATCCTCG AGGAAGCGCG GGTGCATAAT GTCGATGTGA TTGGCCTTTC TGGTCTCATT
ACGCCCTCGC TCGACGAGAT GGTGCATCTT GCCTCTGAAC TGGAGCGTGA GGGCTTTGAC
ATTCCGCTAC TGATCGGGGG GGCGACCACT TCCAAGGTGC ATACGGCGGT GAAAATCGCC
CCTCAATATG AGCGCAACCA GGCGATCTAT GTCACCGATG CAAGCCGTGC TGTCGGGGTG
GTCTCTTCAC TTCTGAACGA CACCCAGCGG GACAGCTATG TCGCTGATAT CCAGAGGGAA
TATAAAGAAG TTGCCGAGCG CCACGAACGT GCCGAGCGCG CCAAAACCCG TTTGCCACTG
ACGGCGGCGC GGGAAAATGC GATGCAGATC GACTGGAGCG GCTATCAGGT CAAAGCGCCC
GAATTCACTG GCGCCCGAGT GGTCGACGAC TGGGATCTCG CGGAAATCGC GCAGTATATA
GACTGGACGC CCTTCTTTCA GACATGGGAG TTGAAAGGCG TTTACCCCCG GATTCTGGAG
CATGAAAAAT ACGGCGAGGC TGCGCGCGCG TTGTTCAAGG ATGCGCGGGC GATGCTCGAC
CGGATCATCA CGGAACAGTG GTTCAAACCG CGCGCAGTAG TGGGGTTTTG GCCTGCAAAT
CGTAAAGGCG ATGATATTCG CCTCTTTAAG GATGACACAC GGGAAGAGGA GCTGGCCACG
TTCTTCACGC TGCGCCAGCA GACCTCCAAG CGCAAGAGCA GCCCAAATCT CGCATTGGCG
GATTTCGTTG CTCCCGAAGG CGTGGCTGAC TGGGTTGGAG GGTTTGTCGT GACCACAGGC
CCAGAAGAGG TCGAGATCGC CGAACGCTTT GAAAAGGCTG GCGATGATTA TAGCGCGATC
ATGGTGAAGG CGCTTGCGGA TCGCTACGCC GAGGCCATGG CCGAGATGCT GCATGAGCGG
GTGCGCCGGG ACTATTGGGG CTATGCTCCG ACAGAGGCTT TTGCCCCTGA GGAGCTGATC
GGAGAGCCCT ATCGTGGCAT TCGTCCCGCC CCAGGCTACC CGGCGCAGCC CGATCATACC
GAAAAGCTCA CCCTCTTCGA ACTCCTCGAT GCAGAAGTGG CCACGGGTGT GACCTTGACC
GAAAGCATGG CGATGTGGCC AGGATCCTCG GTTTCCGGCA TCTATATCGG TCATCCGGAG
GCCTATTATT TCGGCGTCGC CAAGGTCGAA CAGGATCAGG TCGCGGATTA CGCCAAGCGC
AAAGGGCTCT CTCAAGATGA GGCAGAGCGC TGGCTGATGC CGATCTTGAA TTATCACCCG
GGTGGTCGCA CGGGAGATCA AGACGAAATC GCAGCGCAGT AA
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| Protein sequence | MSEPLLRLSG LEPFVLTKDI PFVNVGERTN VTGSARFRKL ITNRDYATAL DVARDQVENG
AQIIDINMDE GLIDSKQAMI DFLNLVAAEP DIARVPIMID SSKWEVIEAG LQCVQGKPIV
NSISLKEGEE SFLHQASLCL AYGAAVVVMA FDEQGQADSF ERKIEICARA YKILTEQVGF
PPEDIIFDPN VFAVATGIEE HDNYGVDFIE ATRWIRENLP HCHVSGGVSN LSFSFRGNEP
VREAMHAVFL YHAIKVGMDM GIVNAGQLAV YDQIDPELRE ACEDVVLNRT PKAGGSATEN
LLDIAERFKG GTREEKKRDL TWRQWPVEKR LEHALVNGIT EFVEEDTEEA RQAAERPLHV
IEGPLMDGMN VVGDLFGAGK MFLPQVVKSA RVMKQAVAVL LPYMEEEKRQ NGGGGKDTAG
TVLMATVKGD VHDIGKNIVG VVLACNNFEI IDLGVMVPPQ KILEEARVHN VDVIGLSGLI
TPSLDEMVHL ASELEREGFD IPLLIGGATT SKVHTAVKIA PQYERNQAIY VTDASRAVGV
VSSLLNDTQR DSYVADIQRE YKEVAERHER AERAKTRLPL TAARENAMQI DWSGYQVKAP
EFTGARVVDD WDLAEIAQYI DWTPFFQTWE LKGVYPRILE HEKYGEAARA LFKDARAMLD
RIITEQWFKP RAVVGFWPAN RKGDDIRLFK DDTREEELAT FFTLRQQTSK RKSSPNLALA
DFVAPEGVAD WVGGFVVTTG PEEVEIAERF EKAGDDYSAI MVKALADRYA EAMAEMLHER
VRRDYWGYAP TEAFAPEELI GEPYRGIRPA PGYPAQPDHT EKLTLFELLD AEVATGVTLT
ESMAMWPGSS VSGIYIGHPE AYYFGVAKVE QDQVADYAKR KGLSQDEAER WLMPILNYHP
GGRTGDQDEI AAQ
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