| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3588 |
|---|
| Symbol | |
|---|
| ID | 4075514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 636897 |
|---|
| End bp | 637490 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 638005106 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_611817 |
|---|
| Protein GI | 99078559 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4973] Site-specific recombinase XerC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.385994 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCGCCAAA CGGGGAACCC GAATACCCAG GTCCAACCTG CAGACTCTCG TTATGAACGA
GCGACCAGCG GGGGGCAGTT CACTACTATT GCGGCCTATC GCGAACACGC GGATGGATTA
GCCTTGCTGA TTTTTGAGCT TGCTCTTGGC ACGGGGCAAC GCGCATCAGA CCTCACGAGA
ATGGAGTGGG GCCATATCGA AGTTGGGCGT ATTTGGGTCA CTCAAGGTAA AACGAATGTT
CGGTTCTGGA TCCCCTTCAC AAAGCGGCTC TCTAGTGTTC TCGCTGGGGT CGATACCTCA
AAGTCACGCT TCATCTTGAC AGATGAGTCG GGCCATCAGC TGAATTATGA TCAGTTACAA
AAACAGGTTA TTCGTGTGCG CAGAGCTGCT GGTCTGATGG ACTACTCTCT CCACGGTCTC
CGGGATAGTG CTGCGGGTGA GCTTGCAGAA GCGGGCTGCA CTGACCATCA GATCGCGGCA
ATCACAGGTC ACAAGAGCCT CTCGATGGTG CAGAAATATT CCAAGGGCGC GAGCCAAAAA
CGCCTCGCGA TAGAGGCTCA AAACCTGCGA GAACAAATAT GGGGCAAAAC GTGA
|
|---|
| Protein sequence | MRQTGNPNTQ VQPADSRYER ATSGGQFTTI AAYREHADGL ALLIFELALG TGQRASDLTR
MEWGHIEVGR IWVTQGKTNV RFWIPFTKRL SSVLAGVDTS KSRFILTDES GHQLNYDQLQ
KQVIRVRRAA GLMDYSLHGL RDSAAGELAE AGCTDHQIAA ITGHKSLSMV QKYSKGASQK
RLAIEAQNLR EQIWGKT
|
|---|
| |