| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3570 |
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| Symbol | |
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| ID | 4075492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 610813 |
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| End bp | 611502 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005084 |
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| Product | haloacid dehalogenase, type II |
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| Protein accession | YP_611801 |
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| Protein GI | 99078543 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0754891 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0443573 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATCA AAACCTGCAT CTTTGACGCC TATGGCACCC TGTTCGACGT GAGCGCCGCG
GCCCGGCAAG CCGCAACAGA GCCCGCTTTT GCACAGATCG CAGACAGCTG GGCCACGCTG
GCGCAGGATT GGCGACAAAA GCAGCTGCAA TACACCTGGC TCAGGGCCGT GACGGGCGCG
CATGACGATT TCTGGCAGGT GACGCATGAT GGCCTGGACT GGGCGATGGA GGCCGCGGGG
CTCCAAGATC AAACAGAACT GAGGCAGCGG TTGCTTGATC TTTACTGGGA ACTCGCCGCC
TACCCGGAGG TTCCAGCCAT GCTGCGCGCC CTGAAAGATG CGGGCTACGA GACTGGCATC
CTCTCGAACG GATCCCCCAA AATGCTTGCG GGCGCGGTAG AGTCGGCCAA CCTCGGCGAC
ACGCTCGATG CAGTGCTCTC GGTCGAAACC GTCGGCGTGT TCAAGCCATC CGCGCGTGTC
TATGATCTCG TTGGAGAACG GTTTGGGACC CGGAAATCCG AGGTTCTTTT TGTCTCGTCC
AATGGTTGGG ACGCCGGCTG TGCCGCCGGA TACGGCTTTG TCACCGCTTG GGTCAATCGC
GCAGGCGAAC CCGTTGACCG CCTGCCCTGG CGCCCCGCTC ATGTGCTGAC CGACCTCCAG
CCCATTCCTG AAATCGCCGC AAACGCCTGA
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| Protein sequence | MTIKTCIFDA YGTLFDVSAA ARQAATEPAF AQIADSWATL AQDWRQKQLQ YTWLRAVTGA
HDDFWQVTHD GLDWAMEAAG LQDQTELRQR LLDLYWELAA YPEVPAMLRA LKDAGYETGI
LSNGSPKMLA GAVESANLGD TLDAVLSVET VGVFKPSARV YDLVGERFGT RKSEVLFVSS
NGWDAGCAAG YGFVTAWVNR AGEPVDRLPW RPAHVLTDLQ PIPEIAANA
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