Gene TM1040_3558 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3558 
Symbol 
ID4075479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp601223 
End bp602101 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content59% 
IMG OID638005071 
ProductNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 
Protein accessionYP_611789 
Protein GI99078531 
COG category[R] General function prediction only 
COG ID[COG0388] Predicted amidohydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.200517 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATCG CAACAGCCGC CTACCCGCTC GACTGGCTCG ACAGCTGGAC CCATTATGAG 
GACAAACTGT CCAAATGGGT CTCGGAGGCT GCTGATGGCG GCGCGGAACT GCTGGTCTTT
CCCGAATATG GTGCGATGGA GCTTGCCACT TTGGATGGAG CCGACATCGC AGGCAATCTC
GAAGCCTCGA TCCAGGCGGT GTCGGACAAA ATGGAAGACG CTGCGCAACT GCATCTCAAG
CTCGCGGCAG AGCACAACGT GCATATTCTC GGCGCATCTG CGCCCGTTCA TGCTGGCTTC
ACGCGCCCGG TAAATCGGGC GGAGTTCTAC TCCCCCCAAG GCAAACGCGC GCATCAGGAC
AAACAGATCA TGACCATGTT TGAGCGCGAT CCCTGGGATA TTGCGCCCGG CGGCCCGCTC
AAGATCTTTG AGACCGCGCT TGGCAAGATT GCAGTCCTCA TCTGCTATGA CAGCGAATAC
CCGCTTTTGG CGCGGGCCCT CTCGGAGGCG GATATGATTC TTGTGCCCTC TTGCACGGAG
GCCCTTGCGG GATACTGGCG CGTGCGCATT GGGGCGATGT CTCGCGCGCT CGAACAGCAA
TGCGTCACGG TGATGTCATC TGTGGTTGGC TCTGCTGCAT GGTCAGAAGC CGTGGACGAA
GGCTGTGGGA TGGGCGGTGT CTTTGGACCA CCAGATACCG GCTTTCCCAG CACAGGCGTG
ATCGCAGAAG GCACCCTCAA CCAGCCCGGT TGGACCTTTG CAGAGGTGGA TCTGCAGGCT
GTCCAAAATG TGCGCAGCGC CGGCGTTGTG CGCAACAAGA CTCACTGGGG TGAGCAGGAC
TCGCGCCTGC AAAATCTTGT TAACCATAAC TTGCTATAA
 
Protein sequence
MKIATAAYPL DWLDSWTHYE DKLSKWVSEA ADGGAELLVF PEYGAMELAT LDGADIAGNL 
EASIQAVSDK MEDAAQLHLK LAAEHNVHIL GASAPVHAGF TRPVNRAEFY SPQGKRAHQD
KQIMTMFERD PWDIAPGGPL KIFETALGKI AVLICYDSEY PLLARALSEA DMILVPSCTE
ALAGYWRVRI GAMSRALEQQ CVTVMSSVVG SAAWSEAVDE GCGMGGVFGP PDTGFPSTGV
IAEGTLNQPG WTFAEVDLQA VQNVRSAGVV RNKTHWGEQD SRLQNLVNHN LL