Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3548 |
Symbol | |
ID | 4075224 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | - |
Start bp | 589306 |
End bp | 590034 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 638005060 |
Product | hypothetical protein |
Protein accession | YP_611779 |
Protein GI | 99078521 |
COG category | [R] General function prediction only |
COG ID | [COG1451] Predicted metal-dependent hydrolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.405363 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.224983 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTCGGC TCGTATTGAC ATACGGCGAT GAACGCATCC CCTATGACGT CAGTCAGGAC GAGCGGCGGA CCTCGAAGGT TGCGATACAC GTCGACCCCG ACGGGAGTGT TAGCGTCGAA GCCCCACCAG GTTTTTCGGA GTGTCGCATT GCGGAAGCTG TCCAACGCCG GGCGCGATGG GTGATCAAAC ATGTGCAGGA AGCGCGAGAG CGTCATAAGC ACCGGATGCC CAAGGAGTAC GTTTCCGGGG AGCAGGTTCT CTATCTTGGC CGCCGCTATG TGCTCAAGGT TATTCCAGTG GATGGACCGC CGAAGCCCGC CAGCCTTGTG GGCAGCCGAC TGCAGGTGGA GACGCAGCGA CAAACATCCG AAGACATTCG CGCTCGTGTC CGTGCCTGGT ACAAAGTGCG AGGCCGTGAC TACTTGGCCC GCCGGTTGGA GCAAGTGTCA AAAAGCTTGC CTTGGGTTCG GCAGGTTCCA GCATTGCGGC TGCTGGAAAT GAAGCGGCAG TGGGGTAGTT GCTCGCCATC GGGCGAGATC ATCGTGAATA CGCACCTGGT CAAGGCACCA CGGCCTTGCA TTGACTACGT TCTTATCCAT GAACTGGCGC ATTTGAAACA CCATGACCAC GGTCCTGAAT TCTGGAGCCT TTTGGACAAT CATGCTGTTG GCTGGCGCAA GGATAAGGCT CAGCTTGATA ATCTCGTCGA AATCTTGACC GCAGACTGA
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Protein sequence | MVRLVLTYGD ERIPYDVSQD ERRTSKVAIH VDPDGSVSVE APPGFSECRI AEAVQRRARW VIKHVQEARE RHKHRMPKEY VSGEQVLYLG RRYVLKVIPV DGPPKPASLV GSRLQVETQR QTSEDIRARV RAWYKVRGRD YLARRLEQVS KSLPWVRQVP ALRLLEMKRQ WGSCSPSGEI IVNTHLVKAP RPCIDYVLIH ELAHLKHHDH GPEFWSLLDN HAVGWRKDKA QLDNLVEILT AD
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