Gene TM1040_3548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3548 
Symbol 
ID4075224 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp589306 
End bp590034 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content57% 
IMG OID638005060 
Producthypothetical protein 
Protein accessionYP_611779 
Protein GI99078521 
COG category[R] General function prediction only 
COG ID[COG1451] Predicted metal-dependent hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.405363 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.224983 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTCGGC TCGTATTGAC ATACGGCGAT GAACGCATCC CCTATGACGT CAGTCAGGAC 
GAGCGGCGGA CCTCGAAGGT TGCGATACAC GTCGACCCCG ACGGGAGTGT TAGCGTCGAA
GCCCCACCAG GTTTTTCGGA GTGTCGCATT GCGGAAGCTG TCCAACGCCG GGCGCGATGG
GTGATCAAAC ATGTGCAGGA AGCGCGAGAG CGTCATAAGC ACCGGATGCC CAAGGAGTAC
GTTTCCGGGG AGCAGGTTCT CTATCTTGGC CGCCGCTATG TGCTCAAGGT TATTCCAGTG
GATGGACCGC CGAAGCCCGC CAGCCTTGTG GGCAGCCGAC TGCAGGTGGA GACGCAGCGA
CAAACATCCG AAGACATTCG CGCTCGTGTC CGTGCCTGGT ACAAAGTGCG AGGCCGTGAC
TACTTGGCCC GCCGGTTGGA GCAAGTGTCA AAAAGCTTGC CTTGGGTTCG GCAGGTTCCA
GCATTGCGGC TGCTGGAAAT GAAGCGGCAG TGGGGTAGTT GCTCGCCATC GGGCGAGATC
ATCGTGAATA CGCACCTGGT CAAGGCACCA CGGCCTTGCA TTGACTACGT TCTTATCCAT
GAACTGGCGC ATTTGAAACA CCATGACCAC GGTCCTGAAT TCTGGAGCCT TTTGGACAAT
CATGCTGTTG GCTGGCGCAA GGATAAGGCT CAGCTTGATA ATCTCGTCGA AATCTTGACC
GCAGACTGA
 
Protein sequence
MVRLVLTYGD ERIPYDVSQD ERRTSKVAIH VDPDGSVSVE APPGFSECRI AEAVQRRARW 
VIKHVQEARE RHKHRMPKEY VSGEQVLYLG RRYVLKVIPV DGPPKPASLV GSRLQVETQR
QTSEDIRARV RAWYKVRGRD YLARRLEQVS KSLPWVRQVP ALRLLEMKRQ WGSCSPSGEI
IVNTHLVKAP RPCIDYVLIH ELAHLKHHDH GPEFWSLLDN HAVGWRKDKA QLDNLVEILT
AD