| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3511 |
|---|
| Symbol | sucA |
|---|
| ID | 4075190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 545904 |
|---|
| End bp | 548855 |
|---|
| Gene Length | 2952 bp |
|---|
| Protein Length | 983 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638005026 |
|---|
| Product | 2-oxoglutarate dehydrogenase E1 component |
|---|
| Protein accession | YP_611745 |
|---|
| Protein GI | 99078487 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.364999 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.890777 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC AGAGCCCCAA CGACATCTTC CATGCGTCCT CCTTTATGCA GGGGCACAAC
GCGGAGTATC TGGAGCAGCT TTATGCCCAG TACGCCAATG ATCCCAACGC AGTAGACGCC
GCGTGGGCGG AATTCTTTCG CGCCATGGGC GACGCTGATG GCGACGTGAA GGCCGAAGCT
GCAGGCCCCA GCTGGGCGCG CAACGACTGG CCGCCCGCCC CTGCCGACGA CCTCACGGCG
GCTCTGACCG GCGAGTGGCC TGCCCCCGTC GAGGCCAAGG CGGCCGGCAA GAAGATTGCC
GACAAGGCCA AGGAAAAGGG TGTCGAAGTC TCTGACGAGG CGATCCAGCG CGCGGTGCTC
GACTCGATCC GCGCTCTGAT GCTGATCCGG GCCTACCGGA TCCGGGGCCA TCTGGCGGCT
GATCTCGACC CGCTGGGCAT GCGCGCCGCC ACGCCGCACC CGGAGCTTGA TCCGAAATCC
TACGGTTTTG ACGGCGCCGA CATGGACCGC CCGATCTTCA TCGACAACGT GCTGGGGCTG
GAAGTGGCCA CCATGCGTCA GATCGTGGAT ATCGTGAAGC GGACCTATTG CGGCACCTTT
GCGCTTCAGT ACATGCATAT CTCGGACCCC GAGCAATCTG CCTGGCTGAA AGAGCGCATC
GAGGGCTATG ACAAGGAAAT CACCTTCACC CGCGAAGGCC GCAAGGCGAT CCTCAACAAG
ATGGTTGAGG CCGAAGGGTT CGAAAAGTTC CTGCATGTAA AATACATGGG CACCAAGCGC
TTTGGTCTGG ATGGTGGTGA GAGCCTCATC CCGGCGATGG AGCAGATCAT CAAGCGCGGC
GGCAACCTCG GTGTCAAAGA CATCGTGATC GGCATGCCGC ACCGCGGCCG CCTGTCGGTT
CTGGCCAATG TGATGCAAAA GCCCTATCGC GCGATCTTCA ACGAGTTCCA GGGCGGATCG
TTCAAGCCCG AAGACGTGGA TGGCTCGGGC GATGTGAAAT ATCACCTCGG CGCCTCTTCG
GACCGTGAGT TTGATGGCAA CAGCGTCCAC CTGTCGCTGA CCGCAAACCC CTCGCACCTT
GAGGCGGTGA ACCCGGTTGT GCTGGGCAAG GTCCGTGCCA AGCAGGACCA GCTGGGTGAC
AAGGACCGCA CGGCGGTTCT GCCGATCCTC CTGCACGGCG ACGCGGCTTT TGCGGGTCAG
GGTGTTGTGG CGGAATGTTT TGCGCTCTCC GGTCTGCGCG GTCACCGCAC CGGCGGCACC
ATGCATATCG TTGTGAACAA CCAGATCGGG TTCACCACCG CACCGCATTT CTCGCGCTCC
TCGCCCTATC CCACCGACAA CGCGCTGGTG GTTGAGGCAC CGATCTTCCA CGTCAACGGT
GACGACCCGG AGGCCGTGGT CCACGCAGCC AAGGTCGCAA CCGAATTCCG CCAGAAGTTC
CACAAGGACG TCGTCATCGA CATCTTCTGC TATCGCCGGT TTGGTCACAA CGAAGGCGAC
GAGCCGATGT TCACCAACCC GTTGATGTAC AAGAAGATCA AGGGTCACAA GACGACCCTG
AGCCTCTACA CGGAACGTCT GGTCAAGGAC GGTCTGATCC CCGAGGGCGA GATCGAAGAC
ATGAAGGCGG CGTTCCAGGC GCACCTCAAC GAAGAGTTCG AGATCGGCAA GACCTACAAG
CCCAACAAGG CCGACTGGCT GGATGGGCGC TGGTCGCATC TCGACAGCAA GGACGAGGAT
TATCAGCGTG GCGAAACCGC CATCAAGCCC GAGACGCTGG AGGAGGTCGG CAAGGGTCTG
ACCACTCTGC CCGAGGGCTA TCCGGTGCAT AAGACCATCG GTCGCTTCCT TGATGCGCGC
AAAAAGATGT TCGAGAGCGG CGAAGGCTTT GACTGGGCCA CCGGCGAGGC GCTGGCGTTC
GGCTCGCTTC TGACCGAGGG GTATCCGGTG CGTCTGGCGG GGCAGGACTC CACCCGCGGG
ACCTTCTCGC AGCGCCATTC GGGCATCGTC AATCAGGACA CCGAAGAGCG CTACTACCCG
CTCAACAATA TCCGCGCGGG TCAGGCCAAC TATGAGGTCA TCGACTCGGC ACTGTCGGAA
TACGCGGTTC TGGGCTTTGA ATATGGCTAC TCGCTGGCAG AGCCCAACGC GCTGACCCTC
TGGGAAGCGC AGTTTGGCGA CTTTGCCAAT GGCGCGCAGA TCATGTTCGA CCAGTTCGTA
TCCTCGGGCG AGAGCAAGTG GCTGCGGATG TCCGGTCTTG TGTGCCTCTT GCCGCACGGG
TTTGAGGGCC AGGGTCCAGA GCACTCTTCG GCGCGTCTGG AGCGTTTCCT GCAGATGTGC
GGTCAGGATA ACTGGATCGT GGCGAACTGC ACGACGCCGG CGAACTACTT CCACATCCTG
CGCCGTCAGC TGCACCGGAC CTTCCGCAAG CCGCTCATTC TGGTGACGCC GAAGTCGCTT
CTGCGCCACA AGCTTGCCGT GTCCAAGGCA CATGAGTTCA CCACCGGCTC GTCCTTCCAC
CGGGTTCTGT GGGATGATGC GGAAACGGGT CTCTCTGAGA CCAAGCTCGT TGAGGACAAG
AAGATCAAGC GCGTGGTGCT GTGTTCGGGC AAGGTCTACT ACGACCTTCT TGAAGAGCGC
GACGCCCGCG GCATCGACGA TGTCTATATC ATGCGGATCG AGCAGTATTA CCCCTTCCCG
GCGATCAGCC TCGTGAAGGA ACTGGAGCGG TTCAAGGGCG CAGAAATGGT CTGGTGCCAG
GAAGAGCCCA AGAACCAGGG TGCCTGGACC TTTATCGAGC CCAACATTGA GTGGGTCCTG
ACCCGCATCA AGGCAAAGAA CACCCGTCCG ATCTATGTCG GGCGCGCCAC CTCGGCCTCG
CCTGCAACCG GCCTGGCCAG CGAACACAAA GCCCAACAAG CTGCGCTCGT GAACGAAGCG
CTGAGCATCT GA
|
|---|
| Protein sequence | MTEQSPNDIF HASSFMQGHN AEYLEQLYAQ YANDPNAVDA AWAEFFRAMG DADGDVKAEA
AGPSWARNDW PPAPADDLTA ALTGEWPAPV EAKAAGKKIA DKAKEKGVEV SDEAIQRAVL
DSIRALMLIR AYRIRGHLAA DLDPLGMRAA TPHPELDPKS YGFDGADMDR PIFIDNVLGL
EVATMRQIVD IVKRTYCGTF ALQYMHISDP EQSAWLKERI EGYDKEITFT REGRKAILNK
MVEAEGFEKF LHVKYMGTKR FGLDGGESLI PAMEQIIKRG GNLGVKDIVI GMPHRGRLSV
LANVMQKPYR AIFNEFQGGS FKPEDVDGSG DVKYHLGASS DREFDGNSVH LSLTANPSHL
EAVNPVVLGK VRAKQDQLGD KDRTAVLPIL LHGDAAFAGQ GVVAECFALS GLRGHRTGGT
MHIVVNNQIG FTTAPHFSRS SPYPTDNALV VEAPIFHVNG DDPEAVVHAA KVATEFRQKF
HKDVVIDIFC YRRFGHNEGD EPMFTNPLMY KKIKGHKTTL SLYTERLVKD GLIPEGEIED
MKAAFQAHLN EEFEIGKTYK PNKADWLDGR WSHLDSKDED YQRGETAIKP ETLEEVGKGL
TTLPEGYPVH KTIGRFLDAR KKMFESGEGF DWATGEALAF GSLLTEGYPV RLAGQDSTRG
TFSQRHSGIV NQDTEERYYP LNNIRAGQAN YEVIDSALSE YAVLGFEYGY SLAEPNALTL
WEAQFGDFAN GAQIMFDQFV SSGESKWLRM SGLVCLLPHG FEGQGPEHSS ARLERFLQMC
GQDNWIVANC TTPANYFHIL RRQLHRTFRK PLILVTPKSL LRHKLAVSKA HEFTTGSSFH
RVLWDDAETG LSETKLVEDK KIKRVVLCSG KVYYDLLEER DARGIDDVYI MRIEQYYPFP
AISLVKELER FKGAEMVWCQ EEPKNQGAWT FIEPNIEWVL TRIKAKNTRP IYVGRATSAS
PATGLASEHK AQQAALVNEA LSI
|
|---|
| |