| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3495 |
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| Symbol | |
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| ID | 4075174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 531293 |
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| End bp | 532558 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005010 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_611729 |
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| Protein GI | 99078471 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.844313 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCATT TTCTCTATCG CGATGGCGCT TTGTACGCCG AAGATGTCCC CGTAGCCGAG
ATTGCCGCTA CGGTGGGCAC GCCGTTCTAC GTCTACTCCA CCGCGACGCT CCTGCGCCAT
TTCCGTCTCT TTGACGAGGC GCTTGAGGGC ACCGACCATC TGGTTTGTTA CGCGATGAAG
GCCGCCTCCA ATCAGGCGAT CCTAAAGACA CTCGCGGCGG CGGGCGCAGG CATGGATGTG
GTGAGCGAAG GCGAATACCG CCGCGCCAAG GCCGCAGGCG TGCCGGGCGA CAAGATCGTG
TTTTCCGGTG TCGGCAAGAC CGCCGAAGAG ATCCGCACCG CGCTCACCGG GGGCATTCGC
CAGTTCAACG TCGAATCCGA GCCCGAGATG GACGTGATCA ATGCCGTTGC GCTCGAGCTT
GGTGTCACCG CGCCGATCAC CGTGCGGGTG AACCCGGATG TGGATGCAAA GACCCACGCC
AAGATCGCGA CCGGTAAATC CGAGAACAAA TTCGGCATCC CCATCGCCAA GGCGCGCGCG
GTCTATGCCC ATGCCGCCAG CCTGCCGGGC CTTGAGGTGA TCGGGATCGA TGTTCACATC
GGCTCGCAAC TCACGGATCT TGAGCCCTTC CGCCTTGCCT ATCAAAAGGT TGCGGAGCTG
ACACAGGCTC TGCGCGCGGA CGGTCACGAT ATTCGCCGCC TTGATCTTGG GGGCGGTCTG
GGCATCCCCT ATACCCGCTC CAATGAGGCC CCGCCGCTGC CGGTGGAATA TGGCCAGATG
ATCAAGGAAG AGCTCGGTCA TCTGGGCTGC GAAATCGAGA TCGAACCGGG CCGTCTGGTG
GCGGGCAATG CGGGGCTGAT GGTCTCTAAG GTGATCTACA TCAAAGAGGG CGAAGGCCGC
GATTTCCTGA TCCTCGACGG GGCCATGAAC GACCTCATCC GCCCAGCGAT GTATGAGGCC
CATCACGACA TCATCCCCGT GGTGGAACCG ACCCCCGGTC TCGAACCGCA ACCCTATGAC
ATCGTGGGCC CGGTCTGCGA AAGCGGCGAC ACCTTTGCCA AACAACGCCT GATGCCGCCG
CTTGCTGCGG GGGATCTGGT GGCGTTTCGC AGTGCCGGGG CTTATGGCGC GGTGATGTCC
AGCGAATACA ACTCGCGCCC CCTCATCCCC GAGGTGCTGG TCCACGGCGA TCAATTTGCA
GTCATCCGGC AGCGTCCGAC CTTTGACGAG ATGATAAATC GCGATACCAT CCCAGAGTGG
CTGTAA
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| Protein sequence | MDHFLYRDGA LYAEDVPVAE IAATVGTPFY VYSTATLLRH FRLFDEALEG TDHLVCYAMK
AASNQAILKT LAAAGAGMDV VSEGEYRRAK AAGVPGDKIV FSGVGKTAEE IRTALTGGIR
QFNVESEPEM DVINAVALEL GVTAPITVRV NPDVDAKTHA KIATGKSENK FGIPIAKARA
VYAHAASLPG LEVIGIDVHI GSQLTDLEPF RLAYQKVAEL TQALRADGHD IRRLDLGGGL
GIPYTRSNEA PPLPVEYGQM IKEELGHLGC EIEIEPGRLV AGNAGLMVSK VIYIKEGEGR
DFLILDGAMN DLIRPAMYEA HHDIIPVVEP TPGLEPQPYD IVGPVCESGD TFAKQRLMPP
LAAGDLVAFR SAGAYGAVMS SEYNSRPLIP EVLVHGDQFA VIRQRPTFDE MINRDTIPEW
L
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