Gene TM1040_3494 details

Gene Information

• Locus tag: TM1040_3494
• ID: 4075173
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ruegeria sp. TM1040
• Kingdom: Bacteria
• Replicon accession: NC_008043
• Strand: +
• Start bp: 527798
• End bp: 531232
• Gene Length: 3435 bp
• Protein Length: 1144 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 638005009
• Product: hypothetical protein
• Protein accession: YP_611728
• Protein GI: 99078470
• COG category: [S] Function unknown
• COG ID: [COG4717] Uncharacterized conserved protein

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.364107
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGCCTCA AACGTCTGTC ACTGGATCGG TTTGGCCATT TCACCGATCA ACAGTTCGAT 
TTTGGCTCTG CCCACGATGG GCATGACTTT CATATCATCT ACGGGCGCAA CGAAGCCGGT 
AAGACCACCA CGATGGAAGC CGTCCTGCGG CTGTTTTACG GCTTTCCAAC GCGCGAGGCC 
TACGCGTTTC GCCATCCGCG CAACAATCTA CAGATCTCTG CGACGCTCGA TTTCAATGGT 
GAGCTGCGCC AGTTCACCCG CCTGCCCACG CGCAGTGGCG CGCTGGTGGA TGAGAGCGGC 
ACCCCACTGC CGGAGGCTGC GCTTTCGGCG CATCTCGCCG GGCTTTCGGA ACCGGATTAC 
CGCCGTCTTC TGTGTCTGGA TGACGAGACG ATTGAACGCG GCGGCGAAGA GATCGCCAAT 
GCTCAGGGCG ATATTGGCCG GCTGCTGTTC TCGGCCGCGG CGGGGGTTGC GGATCTGAGC 
CAGGTGCTTG ATGGCGTGCG CAGCCGGGCC GATGAGATTT GGAAGAAACG CGCCCGCAAC 
ACGCGGATGC GCGAGCTGAA ACGCGCGCTT GAGGAGCTCG ACAAGGAGAT CAAGGCCCGC 
GATGTCTCTG CAAACGCGTG GAAATCCCTC AAGCGGGATC TCACCAAGGC GCAACAGGCT 
GAAGAAGACG CGCGGACGCG TCGCGATGAT CTCAATACAA CCCGGGCCCG GACCGAGGCC 
GAACGGCGCG CCGTGCCGCT TCTTGCAGAA CTTCAGGAGT TGGAACAGGC GCTTGCGCCC 
TTTGCGGATT TTCCCGCACA GCTGGATTTC AACCCCGAGC GGCTCGTCGA GTTGCGCAGC 
GATTTAGGCA GCGCCACGCA GAACATCGCG CGCCTCAGCG ACGAACTTCA GACCCTTGAG 
GAGGAGCAAG CGGCGCTTGT ATTGGATCCC GCACTTGAGG CGCTTCCTGC GGCACTCGAG 
GCGCTTGAGG ATCTGAGTGC CCGCCACCGC ACCGCTGCGC TTGATCTGGA TCGGCGCAAG 
GCCGAGCAGC AGGAGGCGCT CGAGACAATG CGGCAGGCCG CCCGCGACCT TGGTCTCGTC 
GCAGAGAACG CCGACCTTGC GGCCTTGGTT CTTTCCGGCG CTGATATCAC CGCGCTTCAG 
GACGCAAGAG AGCAACTTCG CGCGGCCATC ACCCACGAAG GTCTAGAAGC GCGCGAGGTC 
GAGGATCTCG AGGAGCGCCT GCGCGTAGCG CAGGATGCTG TGCACGATTG TGCGCCGCTC 
GCTGCAGAGG CCGGGCAGTT GCAAGAGCTG CTCTTGAATT TTGATGCAGA GCGGCTGGCG 
ACGGCCCATG CAGCGGCAGC GGAGGCGATC ACAGCCGCCC AATCCCGGGC CGCCCGCAGC 
CTGGCAGCGC TGTCTGTGCG CCACGTGACT TTTGATACCC TGCCGCATTG CCCGAGCAGC 
TTGCGTCAGG CGCAGGAGCA CGCGGATCGT GACGCAGCGC TGGTTCAGGA CCTGCGCCGG 
GCGACTGAGA CGCGCAATCA GCATAAGGAG GACGCCAGCG CCCGCGCCGC GCAGGCAAAG 
GCCCTTGAAC GCGCTGCAAA TGTGGTCTCC GACAGTGAGG CCGAGGCCTT GCGCACCAAA 
CGCGACGCAC TCTGGGCCGT GCATGTAGAC AGTTTGGATG CCGAGAGCGC CGCCACGTTC 
CACGAAGCGC TGAGCCGCCA CGACACCGCT GCTGACGCGC GACTGACCCA ATCGCGAGAA 
CTGGCGCAGC TGCGAGAGAT TGCGCAATCA GAGGCTGCGT CGAAGGCCCG CGCCGCAGAG 
GCCGCCACCC GGATCACTGC GCTAGAAGAA CAGCGCGATG CCATTGCGGC AGAGGTCAAC 
GCCGCTGCCA CCCAGCTTGG CCTTGCGCCG CTTTCCCCGG CAGAGTGGCG CGATTGGGTT 
GAGCGTCATG AAACCGCGCG CGCGGATGCC GAGGCGCTTC GGGACACCAA GGACAGCCAT 
TCGGCCACCT TTGCGCGGGC GCAGGCGTTG ATGGACGCCC TTGCAGAACG TGTACCGTCT 
CTTCCGGCTG ATCTTGATCC GGCCCTTGCA CAGGCGCGCC GGATGGCAGA GGCGGCGCGC 
CAGACCTCCG AGGCGCGCGG CGCCGCAGAA AAGCTCTTGC GGCAGGTGGA GCGCGACCTG 
AATCGGCGAC AGGATCGCCA CAACGCCGCA CAAGAGGCCA AGAAAAAGGC CGAGGACACA 
TGGCGGGCCT TGGTGCAGGA ACTTCTGGCA GGGCAGGTCT CGCCAGAGTC GCTTATGGCC 
TCTTTGGAGC CACTGCGGGT GCTACGCGAG CATGACAAGA CCCGCAGCGC CGCCGCACGT 
CGGGTCCGGA TGATGGAGGC GGATCAGGCG CTTTTTGCTC AAGAGGTCAA CGCCTTGGCA 
CAGCTGCACG GGGTCGGGGT CAGTTCGGAC CCGGGCCAGA CCTATGGCGA CCTCAAATCC 
CTGGCCGAGA CGGCCCGCAT CGCGCGCGAC AAGGCCGCGC GTCTGGAGCG TGCAATTGCA 
ACGGCCACGG CAGAACGTGC GGACAACACC GCGCGGGTTG AGGCCATAGA TCAGGAGCTC 
CGGGCGATCG CTGCGAGCTT TCCCGAGCCC CCACCTGCAC AGGACATCGA CACGTTGCGC 
CAATGCGCCG CGCAGGCCCA GAAGGTCATT GCCGACCGCG CGGCCCGCGA CCGCCTGCGC 
CGTCAGATCC TCTCCGAGCT CGACCTGTCG GATCTGGAGT CGGCGCGCGC GCAGCTTGCC 
GAGACCTCGG TTGCCACGCT CAACGCGCGC CTGGAAAGCA CCCTCTCCGA TCTGACCCAC 
GCCGAAGACG ACCTCACGCA GGCGATCCAA CAGCGGGTCA ACGCAGAACA TGCGCTGGCA 
GAGATCAACG GCGACCGCAC GGCAGCGGCG CTGGTCGAGC AAAAAGCAAC GCTGGAACTG 
CAGCTCGAAG AGGCCGCGCT CGAACATCTG GAGCTGTCTT TGGGGCATCA CCTGGCCTCA 
GACGCAATCA AGCGCTACCG CGACAGCCAC CGCAGCGGCA TGCTGACCGC CACGGAACAG 
TGTTTTGCCG ATCTGACGCA GGGCGCCTAT CCCGCCCTCA GCACACAGAT CTACGGCGAC 
AGCGAGGTCC TTTTGGCGGT CGACAGAACC GGTGCCAGCA AACGGGCCGA CGAGATGTCC 
AAAGGCACCC GGTTCCAGCT CTATCTGGCG CTCCGGGCCG CAGCGCATGA ACAACTGGTG 
GCGCAGGGCA CCATATTGCC GTTCTTCTGC GATGACATCT TTGAGACCTT TGACGAGACC 
CGAACCAGTG CGGCCTGTCA GGTGATGGAA GCCATCGGCA CGCGAGGACA GGCGATCTAT 
CTCACCCATC ATCGCCATGT GGTTGAAATC GCCCAAAGCG TCTGTGCCAC CCCGCCAATC 
ATTCACGAGC TCTGA 

 

Protein sequence

MRLKRLSLDR FGHFTDQQFD FGSAHDGHDF HIIYGRNEAG KTTTMEAVLR LFYGFPTREA 
YAFRHPRNNL QISATLDFNG ELRQFTRLPT RSGALVDESG TPLPEAALSA HLAGLSEPDY 
RRLLCLDDET IERGGEEIAN AQGDIGRLLF SAAAGVADLS QVLDGVRSRA DEIWKKRARN 
TRMRELKRAL EELDKEIKAR DVSANAWKSL KRDLTKAQQA EEDARTRRDD LNTTRARTEA 
ERRAVPLLAE LQELEQALAP FADFPAQLDF NPERLVELRS DLGSATQNIA RLSDELQTLE 
EEQAALVLDP ALEALPAALE ALEDLSARHR TAALDLDRRK AEQQEALETM RQAARDLGLV 
AENADLAALV LSGADITALQ DAREQLRAAI THEGLEAREV EDLEERLRVA QDAVHDCAPL 
AAEAGQLQEL LLNFDAERLA TAHAAAAEAI TAAQSRAARS LAALSVRHVT FDTLPHCPSS 
LRQAQEHADR DAALVQDLRR ATETRNQHKE DASARAAQAK ALERAANVVS DSEAEALRTK 
RDALWAVHVD SLDAESAATF HEALSRHDTA ADARLTQSRE LAQLREIAQS EAASKARAAE 
AATRITALEE QRDAIAAEVN AAATQLGLAP LSPAEWRDWV ERHETARADA EALRDTKDSH 
SATFARAQAL MDALAERVPS LPADLDPALA QARRMAEAAR QTSEARGAAE KLLRQVERDL 
NRRQDRHNAA QEAKKKAEDT WRALVQELLA GQVSPESLMA SLEPLRVLRE HDKTRSAAAR 
RVRMMEADQA LFAQEVNALA QLHGVGVSSD PGQTYGDLKS LAETARIARD KAARLERAIA 
TATAERADNT ARVEAIDQEL RAIAASFPEP PPAQDIDTLR QCAAQAQKVI ADRAARDRLR 
RQILSELDLS DLESARAQLA ETSVATLNAR LESTLSDLTH AEDDLTQAIQ QRVNAEHALA 
EINGDRTAAA LVEQKATLEL QLEEAALEHL ELSLGHHLAS DAIKRYRDSH RSGMLTATEQ 
CFADLTQGAY PALSTQIYGD SEVLLAVDRT GASKRADEMS KGTRFQLYLA LRAAAHEQLV 
AQGTILPFFC DDIFETFDET RTSAACQVME AIGTRGQAIY LTHHRHVVEI AQSVCATPPI 
IHEL