| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3486 |
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| Symbol | |
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| ID | 4075126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 517580 |
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| End bp | 519646 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638005001 |
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| Product | glycoside hydrolase, clan GH-D |
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| Protein accession | YP_611720 |
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| Protein GI | 99078462 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3345] Alpha-galactosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACG GGCTGCAACT CTGGCGGATC GATGCGCCGG GTCAAACGCT GGTGCTGTCG
TCCGATGGCG GTCTGCCCGG CGCGCTCTAC TGGGGCCCTG CGCTGCAGCC GGAGACGGAT
CTGATCGCAC TGGCGCGCGC CGTTGAACAA GAGGTGACAG GCGGGATGAT CGACCGGCTG
CCGCCCTTGT CGCTCTGCCC GGAGGCCGGG CTCTCCTTTG AGGGTCAGCC GGGGCTGGTT
GCCTATCGTG ACGGAGCGCC GCTTTATCCA CGCTTTCGCC TCGAAGACAC CAACGGCGCG
CAGTTTACCT GCCGTGATCG CGCGCTAGGA CTGACGCTGT TCTTTGACTT CGAGGTGCGG
GGCGGGACGA TTGCGGCCTC GACCACGCTG ACCTCGGAGC AGGACATCAT CCTGCACCAT
CTCGCTGCGC CCGTTCTGCC GGGTCCTCAG ATGGGGCAGG AGATTGTCGA TGTCTGTGGC
CGCTGGATCG GTGAATTCCA ACTGCAACGC ACCCCATGGC GCGCGGGCAT TCACAAGCGC
GAGGCCCGTA CCGGGCGTTC GGGGCACGAG CACCCGCCCT TGGCCTATTT TCCCGAGGCG
GGCGCGACCA ACACCCACGG CACCGTTTTT GCCATGCATT ACGGCTGGTC CGGCGGGCAT
GTGATGCTGG CCGAAGAGCT GCCCTCTGGG CGGCGCCAGA TCCAGTGGGG CCATGCCACG
GGCACGCAAG GCGCAGGGAC AAAGTTCCGC AGCGCGCCCC TCTACCTGGC GGTGTCGCAA
GCAGGGTTCA ACGGTTGTGC AGTGGCCTTT CAGCGTCTGC TCAGCGATCA TGTGGTTGTC
TGGCCCAAGC CCGAAACTCC GCGTCCGGTG CATTACAACT GCTGGGAAGC GGTCTATTTC
GATCATGACT TCACTGTCCT GAGCGACATT GCCGAGCGCG CCGCGGCCCT GGGTGCAGAA
CGGTTTGTGC TTGATGATGG CTGGTTTGGC AGACGCGATG ATGACACCAC CTCCCTTGGG
GATTGGCAGA TCGACCGGCG CAAATGGCCC GAGGGGCTAG GCCCGCTCAT TGATCACGTC
GAACGCCTAG GGATGACATT TGGTCTCTGG GTCGAGCCGG AAATGGTGAA CCTCGACAGT
GATCTGGCGC GGGCACATCC CGACTGGGTC TTGGGGCCTG TGGATCAGAT CGAAGGCCGC
CAGCAGCGGG TGTTGGACCT GTCGCGCGAA GACGTGCGAG AGCATCTTTT TCAAGTGCTG
TCCGCGCTCT TGAGCGAGAA CCGCATCGAC TACCTGAAAT GGGACCACAA CCGCCTGTTG
CCGATTGCGG ATGCGGCCCA GACGGAGGGT ATCTATGCCC TGTTGCGGGA CCTTCGCAGC
GCGTTCCCTA AGGTCGAAAT CGAGAGCTGC GCCTCCGGCG GCGGGCGGAT CGACGCGGGT
ATCCTGAGCC TCACGCAGCG GGTTTGGCTC TCGGACAGCA ATGACGCGCT GGAGCGGATG
CGCATTCAGC ATGATGCGGC GCTCCTGTTG CCACTATCCG TGACGGGCTC TCACGTAGGG
CCGCGCACCT GCCATACCTC CGGGCGAACC ATCGATATCC ACATGCGCGC CTGGGTCGCC
GCCCAGCGGC ACATGGGGTT TGAGATGGAT CCGCGCGAGC TGACCCCGAC AGAGATCGAG
GCGCTGACGC GAGTCACAAC CTGGTGGAAA AACAATCGCA ACTGGCGCAT GCAGGCGGAT
ATCTTGCGGT TGGATGCGCC TGATCAAAGC GTGATCGCAG AGCAGCAGAT GGCCGCGGAT
GCCAGCCGCT TTGTGGTGTT TGCGGGCAAG GCACGGAGCG TGCATCAGAT CCTGCCGCGC
CCCTTGCGCC TGACAGAACT TGACCCCAAA GCCCAATACC GGATCGATCT CGTCAACCGC
GAGGCGTTGC ACCACCTGTC GCGCGGGCGC ACCGCGCTCA AGGACGGGCC GCTTACGCTC
AGCGGTGAGA TTCTGATGCA GCAGGGGCTG ACTCTGCCCT GGCAATTTCC TGAAACGATC
TGGGTGATCG AAGGAGAAAA ACTATGA
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| Protein sequence | MSDGLQLWRI DAPGQTLVLS SDGGLPGALY WGPALQPETD LIALARAVEQ EVTGGMIDRL
PPLSLCPEAG LSFEGQPGLV AYRDGAPLYP RFRLEDTNGA QFTCRDRALG LTLFFDFEVR
GGTIAASTTL TSEQDIILHH LAAPVLPGPQ MGQEIVDVCG RWIGEFQLQR TPWRAGIHKR
EARTGRSGHE HPPLAYFPEA GATNTHGTVF AMHYGWSGGH VMLAEELPSG RRQIQWGHAT
GTQGAGTKFR SAPLYLAVSQ AGFNGCAVAF QRLLSDHVVV WPKPETPRPV HYNCWEAVYF
DHDFTVLSDI AERAAALGAE RFVLDDGWFG RRDDDTTSLG DWQIDRRKWP EGLGPLIDHV
ERLGMTFGLW VEPEMVNLDS DLARAHPDWV LGPVDQIEGR QQRVLDLSRE DVREHLFQVL
SALLSENRID YLKWDHNRLL PIADAAQTEG IYALLRDLRS AFPKVEIESC ASGGGRIDAG
ILSLTQRVWL SDSNDALERM RIQHDAALLL PLSVTGSHVG PRTCHTSGRT IDIHMRAWVA
AQRHMGFEMD PRELTPTEIE ALTRVTTWWK NNRNWRMQAD ILRLDAPDQS VIAEQQMAAD
ASRFVVFAGK ARSVHQILPR PLRLTELDPK AQYRIDLVNR EALHHLSRGR TALKDGPLTL
SGEILMQQGL TLPWQFPETI WVIEGEKL
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