| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3467 |
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| Symbol | |
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| ID | 4075101 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 491473 |
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| End bp | 492453 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638004976 |
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| Product | 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD |
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| Protein accession | YP_611701 |
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| Protein GI | 99078443 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2514] Predicted ring-cleavage extradiol dioxygenase |
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| TIGRFAM ID | [TIGR02295] 3,4-dihydroxyphenylacetate 2,3-dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCATTC CCGCCGCAAA TCTTTATCCG CCCTTCAACA TCACCCGCCT CAGCCATGTG
GAATACGGCG TCACCGACCT TGCGGCCTCC CGCACCTTCT ACGTCGACAT CCTCGGCCTG
CAGGTCACTC ATGAGGACGA CAGCCGGATT TATCTGCGCG CCATGGAAGA ACGCGGCCAC
CACTGCATCA TCCTGCGCCA ATCCGACCAC GCGGGCGTCG CGTGCCTCGG CTTCAAACTC
TATGACACGC CGGATCTTGA GAAGGCCGCC GCCTTTTTCG AGGGCAAAAG CCTGCCGGTG
GAGTGGATCG AACGCCCCTT CATGGGGCCG AGCTTGCGCA CCCGCGATCC ATGGGGTGTG
CCGCTGGAGT TCTACGTCAA GATGGACCGC CTCCCGCCGA TACATCAGCA GTACAGGCTC
TATAATGGCG TGAAACCCCT CCGCATCGAC CACTTCAACA TGTTTTCGGC CAATGTCGAC
GCGGCGGTGG CCTTCTACGG CGAGATGGGG TTTCGCGTCA CCGAATATAC CGAGGATGAC
GACTCCGGCC GCGTCTGGGC AGCCTGGATG CACCGCAAGG GCGGCGTGCA TGATGTGGCC
TTCACCAATG GAACCGGCCC GCGTCTGCAT CACACCGCCT TTTGGGTACC AACCCCGCTC
AACATCATCG ACCTCCTCGA TCTGATGTCG ACCACCGGCT ATGTCGCCAA TATCGAACGC
GGCCCCGGCC GCCACGGCAT TTCCAACGCG TTCTTCCTCT ATGTGCGCGA CCCCGACGGC
CACCGGATCG AAATCTATTG CTCGGACTAT CAGACCTGCG ATGCGGATCT GGAGCCGATC
AAATGGTCCC TCACCGACCC GCAGCGCCAG ACCCTCTGGG GCGCACCCGC ACCGCGCAGC
TGGTTCGAAG AAGGCTCCCT GTTCGACGGG GCCGAAACAC GCGACAGTGA TCTCAAAGCA
CAACCGATCA TCGCGCCGTA A
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| Protein sequence | MPIPAANLYP PFNITRLSHV EYGVTDLAAS RTFYVDILGL QVTHEDDSRI YLRAMEERGH
HCIILRQSDH AGVACLGFKL YDTPDLEKAA AFFEGKSLPV EWIERPFMGP SLRTRDPWGV
PLEFYVKMDR LPPIHQQYRL YNGVKPLRID HFNMFSANVD AAVAFYGEMG FRVTEYTEDD
DSGRVWAAWM HRKGGVHDVA FTNGTGPRLH HTAFWVPTPL NIIDLLDLMS TTGYVANIER
GPGRHGISNA FFLYVRDPDG HRIEIYCSDY QTCDADLEPI KWSLTDPQRQ TLWGAPAPRS
WFEEGSLFDG AETRDSDLKA QPIIAP
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