| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3450 |
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| Symbol | |
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| ID | 4075084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 473885 |
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| End bp | 474808 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004959 |
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| Product | auxin efflux carrier |
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| Protein accession | YP_611684 |
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| Protein GI | 99078426 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0679] Predicted permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.476606 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAGA TTTTCTTTCG CACGCTTCCG TTCTTTGCAA TCATCGGCCT TGGCTATTGG
GCGGGGCGGA CACGGTTTTT TACCGATGAG GCGACGGCCT ATCTGACAAA ATTCGTCTTT
TTCTTTCCTC TCTCCGCGAT GATCTTTCGC TTTGCGGCCA ATCTCTCGGT CACGGAGATT
TTCGACCCCA ACCTGATCCT TGGCTATCTC GCCGGGACCC TTGGTGTCTA TCTGGTGGCG
ACCGTGGTGG CGGTGCTGAG GCGGCAGGAC ATGTCGACCG CCGCCGTCGA GGCCCAATGC
GCGGCCATCG GCAATGTCGG CTTTCTTGGC ATTCCGATGA TGGTGATCCT CTTTGGCGAA
GCCGCCGTCG GGCCGATGAT GCTGGTGCTC GCTGTGGATC TGGTGGTGTT TTCTTCGCTG
ATCGTGGTGC TCATCAACGC GCATCGGGGT GCGGGTCTCA GTCTGGGGAC ATTCAAGCTG
GTGGGCATGG GGCTGCTGCG GAACCCAATG ATCCTGTCGA TCGTTGCGGG GCTGGCCTGG
TCCGCTGGTG AAGTGCCGAT CCCGGCGCCG ATGAATGACT TTCTCGCCAT TCTGGGCGGG
GCCGCGACAC CGGGTGCGCT CTTTGCAATT GGTGCCTCGC TTGCCTCCAA ATCCGCCGAG
CGGGTGGAGG TCGCAGGCTG GCTCTCTTTT GCAAAACTGG TGTTGCACCC CCTTGGTGTC
GCAGCGGGTG TCTTGTGGCT GATGCCTGTC ACGCCGTTTT CAGCAGCGGT GGCGATTTCC
GCCGCCTCGC TGCCGGTTGC CGGCAATGTC TACATGCTGG CGCAACACTA TGGCGTTGCT
CCGCAACGGG CCTCGGCAGC GATCCTGATT TCGACCGTGG TTTCAATCGT GACGGTGCCG
CTGGTGATCG CCTGGGTGTC GTGA
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| Protein sequence | MAEIFFRTLP FFAIIGLGYW AGRTRFFTDE ATAYLTKFVF FFPLSAMIFR FAANLSVTEI
FDPNLILGYL AGTLGVYLVA TVVAVLRRQD MSTAAVEAQC AAIGNVGFLG IPMMVILFGE
AAVGPMMLVL AVDLVVFSSL IVVLINAHRG AGLSLGTFKL VGMGLLRNPM ILSIVAGLAW
SAGEVPIPAP MNDFLAILGG AATPGALFAI GASLASKSAE RVEVAGWLSF AKLVLHPLGV
AAGVLWLMPV TPFSAAVAIS AASLPVAGNV YMLAQHYGVA PQRASAAILI STVVSIVTVP
LVIAWVS
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