| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3442 |
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| Symbol | |
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| ID | 4075616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 468295 |
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| End bp | 468849 |
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| Gene Length | 555 bp |
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| Protein Length | 184 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638004951 |
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| Product | isopentenyl-diphosphate delta-isomerase |
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| Protein accession | YP_611676 |
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| Protein GI | 99078418 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1443] Isopentenyldiphosphate isomerase |
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| TIGRFAM ID | [TIGR02150] isopentenyl-diphosphate delta-isomerase, type 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.580017 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAGAGC GCCGCCCCGA TCTGATCCCC GCATGGGTTG ATGGAACCCT GACGCCCGTG
GACAAGCTGC GCGCCCATCA GGAGGGGATG CGACATAAGG CCGTGTCCGT TTTTGTGGTA
CAGGGGCGCG AGATCCTGAT GCAGCGGCGC GCGATGGGCA AGTACCATAC GCCCGGTCTC
TGGGCGAACA CCTGCTGCAC CCATCCGCAG TGGCGCGAGG CGTCGGATCG CTGCGCGGTG
CGTCGGCTTC GGGAAGAGCT GGGCCTGGAG GGTCTGCATC CCGAGTATCG CCACACGCTT
GAGTATCGCG CCGACGTGGG CGGCGGGCTT ATTGAACACG AAGTTGTCGA TGTCTACCTT
GCCCATATGC TCGCACCGCT TGGGCTGGCG CCAAATCCGG CAGAGGTGAT GGAGACTCGC
TGGGTCGATT ATCATGACCT CTTGGCGGAG GTGGAGCGCC ATCCGGATCG GTTCACGCCC
TGGCTCAAGA TTTATCTGGC CGACTATGCG GATGTGATCT TTGGCCCCGA GCTGATCGTC
TCCGCAAAGC CCTGA
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| Protein sequence | MTERRPDLIP AWVDGTLTPV DKLRAHQEGM RHKAVSVFVV QGREILMQRR AMGKYHTPGL
WANTCCTHPQ WREASDRCAV RRLREELGLE GLHPEYRHTL EYRADVGGGL IEHEVVDVYL
AHMLAPLGLA PNPAEVMETR WVDYHDLLAE VERHPDRFTP WLKIYLADYA DVIFGPELIV
SAKP
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