Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3431 |
Symbol | |
ID | 4075605 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 454284 |
End bp | 456554 |
Gene Length | 2271 bp |
Protein Length | 756 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638004940 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_611665 |
Protein GI | 99078407 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGCAAA CACAGCCTGA CACGGATGGA CCGTTGTCCC AGCACAATGC GCGCTTCAGC CCTCGTGGGT TGTTGATCCG GTACGCGGTC ATCCGCGCGC GGATGTATTA CGCGCGGATG TTTGCGGCGG CAGGTCTCAC ATCGGTGCTG GCGGTGATCT TTGGCCCCTT CTGGCCGCTC GTCTTTTTTG TGCTCTACCT GATCACGGAC AAGGCAGAGA CCACCTATCT GCGCGGCCTG CCGGAGCGGC TTGAAAATGG CACATCGCTT GCCAAAGCCA AGCGGATCAT CTTTGTGTTT TCTGTTCTCT ACGCTGGCAG TGTCTGTGGA TTTGCCGCCA TCCCCTATGT GCAGATGCAT ACGGAGGCGG GCGCGCATGA AATCCTGGCG GAGCCGTTCT TTGCGCTGTG TATCGTGCTT GGACCCGCGC TGAGTGCCGC TTTGGATCTG AGATATGTGC CGCTTGCCGC ATCGGTGCGC CTCTTGATGC TTTCGCTTTT GCCATTTGGC CTGACCGCGC ATATTTTGCT CCAGAACCAG ACACATGGCG CTGATTTGCA GCTGATGGTG GCGGGGCTTG TCGCCTTCTT TTTCACGCAG ATCTGGTTTG TCGTGATGGT GCAGAAACGG CACCGCAATT CACGTCGGAA CCTGCGGTCT CAGGCGCTGC AACGGCAGGC GCTCGAGGAC GCCTACATGC GTCTCTTTGA CCAAAAACAA GAAGCGCGAC GCCTGGCGAT GATTGCCGAA CACGCCAATG ATGGCGTGAT GCTGATTGGT CGGGACGGGA TCGTGCGCTG GGCCAACGAC GGGTTTTCGC GCCTCACAGG CTACACGTTT GACGAACTTG TCGGGCAGAA CCCGGGCAAG ATCCTCAACA GTGAAAACAC CGATCCCGCC GCCCTGCGGG TCATCGAGGC GGGGCGCGAA AAAGGAGAGC CTTTCCGCGC CGAGCTCATC AATCGACGCA AGGATGGCAA GGAAATCTGG ATCGAAACCA ATCAGGTTCC GGTCTTTGAC GACACCGGGC AGATCGAAAC CTACATCGCG GTAGAGCGGG ATGTCACGGC CACCAAGGAG TATGAACGCC AACTGAAAGA AGCGCGTTTG GCCGCGGAAG AAGGCGCACG GATCAAGGAA GAGTTCCTGG CCACCATGAG CCACGAATTC CGCACCCCGA TGAACGGGGT GATCGGCATG GCGCAGATGT TGCAGGCAAC GGATCTGAGC GAGGATCAAC GCCTGTACAC CGACACGATC CTTGGGTCCT CGCGGGCGCT TCTTGCGCTG ATCAACGATG TGCTTGATCT GTCGCATATG AACGCTGCCG GGGTGTCGCT GTTCAACGTT GATTTTGATC TCCATGCCTG TGTCGGCGAC ATCGTCCGCC TGCTGAGCGG TCAGGCCGAC GAAAAGCATC TGGAGCTGTC GGTTGAGATT GACCCGGACG TGCCCGTGTG GGTCACCGGA GATGACCGCC GGCTGCGCCA GATCCTCGTC AACCTGCTTG GCAACGCAGT GAAATTCACC ACAAGCGGGT CGATCTTCAT TCGGCTGCGT GGCGTGGTGA CCGGAGATCA GGTCGCGCTT AAGATTGAGG TCGAAGACAC CGGGATCGGT ATACCTGCCG ACAAGCTGGA GAAGATCTTT GAGCGCTTCT CGCAGGCGGA CAATGCCATT TCCCGCAAGT ATGGCGGCAG CGGGCTTGGG TTGTCGATCT CGCGCGGGTT GGCGCAGGCG ATGGGCGGCG ACATCGATGT CACCTCGGTC GAAGGGGAGG GGGCCTGTTT TACCCTCATG CTCGACATGG GGGTCGCGGA CTGCCCTTCT ATCGTCGCCG ATGAGGCTGA GGATGCGGAC TCCCTGCCCG CGTTGGACCA GCTTCAGGGT TTGCGCTTGT TGGTTGCCGA GGACAATCGC GTCAATCGCC TCCTGATCCG CAAGTTTCTC GACGATGCCC CGCTCGAGCT GCGCTTTGCC ACCAATGGCG CAGAGGCGCA GGAACTGGCG AAACGGTTCC GCCCACAGGT GATCCTGATG GACATGTCCA TGCCCGAGGT GAACGGGCTC GAAGCCACCC GCGCGATCCG CTCGTTTGAC ATAACCCAGC CCTATATCGC GGCGCTCACA GCCAATGTCG ACGAGACGAG CCGGCAGGCC TGTGTAGATG CAGGTATGGA TACGTTCCTG AGCAAGCCTC TGTCGCGCAA GGAACTTTTG AACCTGCTTC TGACGTTTTC CGAAAGGGCG CGGGCATCAG AACGCGGTTG A
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Protein sequence | MEQTQPDTDG PLSQHNARFS PRGLLIRYAV IRARMYYARM FAAAGLTSVL AVIFGPFWPL VFFVLYLITD KAETTYLRGL PERLENGTSL AKAKRIIFVF SVLYAGSVCG FAAIPYVQMH TEAGAHEILA EPFFALCIVL GPALSAALDL RYVPLAASVR LLMLSLLPFG LTAHILLQNQ THGADLQLMV AGLVAFFFTQ IWFVVMVQKR HRNSRRNLRS QALQRQALED AYMRLFDQKQ EARRLAMIAE HANDGVMLIG RDGIVRWAND GFSRLTGYTF DELVGQNPGK ILNSENTDPA ALRVIEAGRE KGEPFRAELI NRRKDGKEIW IETNQVPVFD DTGQIETYIA VERDVTATKE YERQLKEARL AAEEGARIKE EFLATMSHEF RTPMNGVIGM AQMLQATDLS EDQRLYTDTI LGSSRALLAL INDVLDLSHM NAAGVSLFNV DFDLHACVGD IVRLLSGQAD EKHLELSVEI DPDVPVWVTG DDRRLRQILV NLLGNAVKFT TSGSIFIRLR GVVTGDQVAL KIEVEDTGIG IPADKLEKIF ERFSQADNAI SRKYGGSGLG LSISRGLAQA MGGDIDVTSV EGEGACFTLM LDMGVADCPS IVADEAEDAD SLPALDQLQG LRLLVAEDNR VNRLLIRKFL DDAPLELRFA TNGAEAQELA KRFRPQVILM DMSMPEVNGL EATRAIRSFD ITQPYIAALT ANVDETSRQA CVDAGMDTFL SKPLSRKELL NLLLTFSERA RASERG
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