| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3430 |
|---|
| Symbol | |
|---|
| ID | 4075604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 453595 |
|---|
| End bp | 454200 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638004939 |
|---|
| Product | nicotinamidase |
|---|
| Protein accession | YP_611664 |
|---|
| Protein GI | 99078406 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.498347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGCGG CAGTGACACA GGCTCTTCTC GTTATTGATG TGCAGAATGA TTTTTGCCCC
GGTGGCGCGC TGGCGGTGAC GGAGGGCGAT GAGGTCGTTG CCCCGATCAA CGCCATGATG
GAGCGGTTCG ACACCGTGAT CCTGACGCAG GACTGGCATC CCAAGGGGCA TTCGTCCTTT
GCCAGTTCTC ATCCCGGGCA TGCGCCCTTT GACACGATGG AAATGTATTA TGGTCAACAG
GTTATGTGGC CCGATCATTG TGTTCAGGGC AGCCAGGGCG CAGAGTTTCA CCCAAGGCTG
CGCACTGACG GGGACATGAT CATCCGCAAA GGGTTTCGCC CCGAGGTGGA TAGCTATTCC
GCGTTTTTTG AAAACGACCA GACCACGCCG ACCGGGCTCG AAGGCTACCT GCGCACGCGC
GGGATCTCGG ATCTGACACT GGTGGGCCTG GCCACGGATT TCTGCGTCGC GTTTTCGGCT
CTGGATGCGC GCCGACTTGG TTTTTCCGTG GAAGTTGAGC TGGCAGCCTG CCGTGCAATC
GATCTGGATG GGTCCCTGGC AACGCAGCTT GAGAATATGC GTCAAAAAGG CGTGAAAATT
TCGTGA
|
|---|
| Protein sequence | MEAAVTQALL VIDVQNDFCP GGALAVTEGD EVVAPINAMM ERFDTVILTQ DWHPKGHSSF
ASSHPGHAPF DTMEMYYGQQ VMWPDHCVQG SQGAEFHPRL RTDGDMIIRK GFRPEVDSYS
AFFENDQTTP TGLEGYLRTR GISDLTLVGL ATDFCVAFSA LDARRLGFSV EVELAACRAI
DLDGSLATQL ENMRQKGVKI S
|
|---|
| |