| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3423 |
|---|
| Symbol | |
|---|
| ID | 4075597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 445913 |
|---|
| End bp | 447013 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638004932 |
|---|
| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
|---|
| Protein accession | YP_611657 |
|---|
| Protein GI | 99078399 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0969116 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.511513 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTTT CGTTCCTGGA TTTGAGCGCG GCTTATGCAG AGGTTTCGGC AGAACTCGAG
GCGGCCGCTC AGCGTGCGAT GCGCTCTGGC TGGTACATTG GCGGGCCAGA AGTTACGGCG
TTTGAAACCG CCTTTGCCAA GTTCTGCGAC GCAAAAGACG CCATCGGCGT GGCCAATGGT
TTGGAGGCGA TAGAGATTGC CCTTCATGCC TTTGAGATTG GCGCAGGGGA CGAGGTCATC
GTTCCGGCCA ACACATTCAT CGCGACCTGG CTTGCGGTGG CTCGCCGCGG TGCGGTGATT
GTGCCCGTCG AGCCGGATCC CGAGACCTAC AACATCACAC CCGAGGCAGT TGCAGAGGCA
ATCACACCGC GGACACGGGC GGTGATTCCG GTACATCTTT ATGGTCAGCC AGCGGACATC
GATGGGATCA TGCGCGTCGC GTCAGAGCGT GATCTGATCG TGATCGAAGA TGCTGCGCAA
TGTCATGGGG CTCGGTGTCA CGGCGCGCGG ATCGGGAGTG TCGGCCACGC CGCGACTTGG
AGCTTTTATC CGTCCAAGAA CCTCGGCGCG CTTGGTGATG GCGGTGCGAT TACCACCAAC
CATGCCGAAG CCGCCGCGCG CATGCGGTTG CTAAGCAACT ACGGATCTTC CCAGAAGTAC
ATTCACGACC TTCCGGGAAC AAACAGTCGC CTGGATCCGC TGCAAGCCGC GATGCTATCG
GTCAAGCTTC CACTGCTTGA CGAGTGGAAT CGTCGTCGAC AAGCCGTTGC AGCAGAGTAT
CTGGATGCTT TGGCGGAAAC CGCGCTTGTT CTGCCCAAAA TCGCTGATTG GGCAGAGCCG
GTCTGGCATC TCTTCGTCGT CCGCCACCCA GATCGCGACG ACCTGATGAC CGCATTGCGA
GAACGTGGGG TGGAGACACT CATTCACTAT CCGATCCCGC CGCATCGACA AAACGCTTTC
AAAGATCTCG GATTTGGCGA AGGGGCCTTT CCAATCACGG AACAGATGTC GCAGGAATGC
TTTAGCTTGC CAATGGGTCC GCATCTTTCC ACCGATGATA CCCAGCGCGT GATTGCCGCC
CTCAAGGAGC TCTTGGCGTG A
|
|---|
| Protein sequence | MSVSFLDLSA AYAEVSAELE AAAQRAMRSG WYIGGPEVTA FETAFAKFCD AKDAIGVANG
LEAIEIALHA FEIGAGDEVI VPANTFIATW LAVARRGAVI VPVEPDPETY NITPEAVAEA
ITPRTRAVIP VHLYGQPADI DGIMRVASER DLIVIEDAAQ CHGARCHGAR IGSVGHAATW
SFYPSKNLGA LGDGGAITTN HAEAAARMRL LSNYGSSQKY IHDLPGTNSR LDPLQAAMLS
VKLPLLDEWN RRRQAVAAEY LDALAETALV LPKIADWAEP VWHLFVVRHP DRDDLMTALR
ERGVETLIHY PIPPHRQNAF KDLGFGEGAF PITEQMSQEC FSLPMGPHLS TDDTQRVIAA
LKELLA
|
|---|
| |