| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3413 |
|---|
| Symbol | |
|---|
| ID | 4075587 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 434778 |
|---|
| End bp | 435386 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638004922 |
|---|
| Product | Na(+)-translocating NADH-quinone reductase subunit E |
|---|
| Protein accession | YP_611647 |
|---|
| Protein GI | 99078389 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2209] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE |
|---|
| TIGRFAM ID | [TIGR01940] NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.33701 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.444883 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGGCT TACTGTCCCT CGCGGTCAAG GCGATCTTTG TTGAGAACCT GGCCCTGTCG
TTCTTCCTTG GCATGTGTAC CTTCCTGGCG GTGTCCAAGA AGATCTCCAC TGCAATCGGT
CTTGGGGTTT CGGTCATGCT GGTGCAGGGC ATCACCGTGC CTGCAAACAA CCTGATCCTG
ACCTACCTTC TGGCGCCGGG CGCACTGGCC TGGGCCGGGT TTGGCGATGT GGATCTGACC
TTCCTGGGTC TGATCTCATA CATCGGTGTG ATCGCGGCCA TGGTGCAGAT CCTCGAGATG
CTGCTCGATA AGTATTTCCC GCCGCTTTAC AACGCCTTGG GTGTGTTCTT GCCGCTCATC
ACCGTGAACT GCGCGATCCT TGGGGGCTCG CTCTTCATGG TGGAACGCAA CTATGATTTC
GCCGAGGCGG CGACATATGG TCTCTCGTCC GGGTTTGGCT GGGCGCTGGC GATCACCGCC
ATGGCGGGCG TGCGCGAGAA GCTCAAATAC TCTGACATTC CCGACGGGCT TCAGGGTCTC
GGCATCACTT TCATCACCGC AGGTCTGATG GCGCTGGCCT TCATGTCCTT CAGCGGCGTG
AAACTCTGA
|
|---|
| Protein sequence | MEGLLSLAVK AIFVENLALS FFLGMCTFLA VSKKISTAIG LGVSVMLVQG ITVPANNLIL
TYLLAPGALA WAGFGDVDLT FLGLISYIGV IAAMVQILEM LLDKYFPPLY NALGVFLPLI
TVNCAILGGS LFMVERNYDF AEAATYGLSS GFGWALAITA MAGVREKLKY SDIPDGLQGL
GITFITAGLM ALAFMSFSGV KL
|
|---|
| |